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A

a - Variable in class org.geppetto.model.values.impl.ConnectionImpl
The cached value of the 'A' containment reference.
abstract_ - Variable in class org.geppetto.model.types.impl.TypeImpl
The cached value of the 'Abstract' attribute.
ABSTRACT_EDEFAULT - Static variable in class org.geppetto.model.types.impl.TypeImpl
The default value of the 'Abstract' attribute.
access - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
access - Variable in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
access - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
access - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
access - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
AConversion - Class in org.geppetto.core.conversion
 
AConversion() - Constructor for class org.geppetto.core.conversion.AConversion
 
activeExperiment - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
activeExperimentId - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
activeExperimentID - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.PersistedProject
 
activeExperimentId - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
addColor(String, String) - Method in class org.geppetto.model.neuroml.features.CanvasCustomisation
 
addConnection(WebsocketConnection) - Method in class org.geppetto.frontend.controllers.ConnectionsManager
Add new connection to list of current ones
addDATFile(String, String[]) - Method in class org.geppetto.core.recordings.ConvertDATToRecording
 
addedExperiment - Static variable in class org.geppetto.simulation.test.GeppettoManagerTest
 
addExperimentToQueue(IUser, IExperiment, ExperimentStatus) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
addFeature(IFeature) - Method in class org.geppetto.core.services.AService
 
addFeature(IFeature) - Method in interface org.geppetto.core.services.IService
 
addGeppettoProject(IGeppettoProject, IUser) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
addGeppettoProject(IGeppettoProject, IUser) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
addGeppettoProject(IGeppettoProject, IUser) - Method in class org.geppetto.persistence.GeppettoDataManager
 
addGrandChildren() - Method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
addInitialVariable() - Method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
addLibrary(GeppettoLibrary) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
addList(List<Type>, StringBuilder) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
addListener(MessageSenderListener) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
addListener(MessageSenderListener) - Method in interface org.geppetto.frontend.messaging.MessageSender
 
addLoginTimeStamp(Date) - Method in interface org.geppetto.core.data.model.IUser
 
addLoginTimeStamp(Date) - Method in class org.geppetto.core.data.model.local.LocalUser
 
addLoginTimeStamp(Date) - Method in class org.geppetto.persistence.db.model.User
 
addModelParameter(IParameter) - Method in interface org.geppetto.core.data.model.IAspectConfiguration
 
addModelParameter(IParameter) - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
addModelParameter(IParameter) - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
addNewUser(String, String, long) - Method in class org.geppetto.frontend.dashboard.service.UserResource
 
addPoint(int, SWCPoint) - Method in class org.geppetto.model.swc.format.SWCModel
 
addRadius(String, String) - Method in class org.geppetto.model.neuroml.features.CanvasCustomisation
 
addRefComponents(Lems, Component) - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
addSetInteger() - Method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
addSibling() - Method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
addSiblingSameName() - Method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
addSimulationResult(ISimulationResult) - Method in interface org.geppetto.core.data.model.IExperiment
 
addSimulationResult(ISimulationResult) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
addSimulationResult(ISimulationResult) - Method in class org.geppetto.persistence.db.model.Experiment
 
addSingleInteger() - Method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
addTag(Tag) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
addToLogMessage(String) - Method in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
addToZip(URL) - Method in class org.geppetto.core.utilities.Zipper
 
addToZip(URL, String) - Method in class org.geppetto.core.utilities.Zipper
 
addTypesToLibrary(GeppettoLibrary) - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
addTypeToLibrary(Type, GeppettoLibrary) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
addValues(String, double, String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Calls overloaded method to add values to file.
addValues(String, int, String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Calls overloaded method to add values to file.
addValues(String, float, String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Calls overloaded method to add values to file.
addValues(String, Double[], String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Stores information in a Recording Object, which is then placed inside a map.
addValues(String, Double[][], String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Stores information in a Recording Object, which is then placed inside a map.
addValues(String, int[], String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Stores information in a Recording Object, which is then placed inside a map.
addValues(String, float[], String, String, boolean) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Stores information in a Recording Object, which is then placed inside a map.
addVariable(Variable) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
addVariableToType(Variable, CompositeType) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
addVariableValue(GeppettoModel, ExperimentState, String) - Method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
addVariableValue(GeppettoModel, ExperimentState, String) - Method in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
addVariableValue(GeppettoModel, ExperimentState, String) - Method in class org.geppetto.core.TestConvertDATToRecordingClass
 
addVariableValue(GeppettoModel, ExperimentState, String) - Method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
addWatchedVariable(IAspectConfiguration, String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
addWatchedVariable(IAspectConfiguration, String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
addWatchedVariable(IAspectConfiguration, String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
admin() - Method in class org.geppetto.frontend.admin.AdminServlet
 
admin - Variable in class org.geppetto.persistence.util.DBTestData
 
AdminErrorObject - Class in org.geppetto.frontend.admin
 
AdminErrorObject() - Constructor for class org.geppetto.frontend.admin.AdminErrorObject
 
AdminServlet - Class in org.geppetto.frontend.admin
 
AdminServlet() - Constructor for class org.geppetto.frontend.admin.AdminServlet
 
AdminSimulationObject - Class in org.geppetto.frontend.admin
 
AdminSimulationObject() - Constructor for class org.geppetto.frontend.admin.AdminSimulationObject
 
AdminUserObject - Class in org.geppetto.frontend.admin
 
AdminUserObject() - Constructor for class org.geppetto.frontend.admin.AdminUserObject
 
advanceTimeStep(double, Pointer) - Method in class org.geppetto.core.simulator.ASimulator
 
AExternalProcessNeuronalSimulator - Class in org.geppetto.simulator.external.services
 
AExternalProcessNeuronalSimulator() - Constructor for class org.geppetto.simulator.external.services.AExternalProcessNeuronalSimulator
 
AExternalProcessSimulator - Class in org.geppetto.core.simulator
Abstract simulator class for external processes
AExternalProcessSimulator() - Constructor for class org.geppetto.core.simulator.AExternalProcessSimulator
 
afterExecute(Runnable, Throwable) - Method in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
AModelInterpreter - Class in org.geppetto.core.model
 
AModelInterpreter() - Constructor for class org.geppetto.core.model.AModelInterpreter
 
AND_VALUE - Static variable in enum org.geppetto.model.datasources.BooleanOperator
The 'AND' literal value.
anonymous - Variable in class org.geppetto.persistence.util.DBTestData
 
anonymousTypes - Variable in class org.geppetto.model.variables.impl.VariableImpl
The cached value of the 'Anonymous Types' containment reference list.
AnyPrimitiveType - Interface in org.geppetto.model.types
A representation of the model object 'Any Primitive Type'.
APopulateProjectionTypes - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
APopulateProjectionTypes(PopulateTypes, GeppettoModelAccess, GeppettoLibrary) - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
APP_KEY - Variable in class org.geppetto.core.services.DropboxUploadService
 
APP_SECRET - Variable in class org.geppetto.core.services.DropboxUploadService
 
AppConfig - Class in org.geppetto.simulation
 
AppConfig() - Constructor for class org.geppetto.simulation.AppConfig
 
appConfig - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
appendResults(QueryResults) - Method in interface org.geppetto.core.datasources.IQueryListener
 
Application - Class in org.geppetto.frontend.controllers
 
Application() - Constructor for class org.geppetto.frontend.controllers.Application
 
applicationContext - Variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
applicationContexts - Static variable in class org.geppetto.core.services.registry.ApplicationListenerBean
 
ApplicationListenerBean - Class in org.geppetto.core.services.registry
 
ApplicationListenerBean() - Constructor for class org.geppetto.core.services.registry.ApplicationListenerBean
 
ApplicationListenerBean - Class in org.geppetto.frontend
 
ApplicationListenerBean() - Constructor for class org.geppetto.frontend.ApplicationListenerBean
 
apply(EObject, <any>) - Static method in class org.geppetto.model.util.GeppettoModelTraversal
Visits the passed object plus its direct and indirect children
apply(<any>, <any>) - Static method in class org.geppetto.model.util.GeppettoModelTraversal
Visits all the passed objects plus their direct and indirect children
applyDirectChildren(EObject, <any>) - Static method in class org.geppetto.model.util.GeppettoModelTraversal
Visits the passed object plus its direct children
applyDirectChildrenOnly(EObject, <any>) - Static method in class org.geppetto.model.util.GeppettoModelTraversal
Visits the direct children of the passed object
AQUERY_RESULT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'AQuery Result' class.
AQUERY_RESULT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'AQuery Result' class.
AQUERY_RESULT_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'AQuery Result' class.
AQUERY_RESULT_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'AQuery Result' class.
AQueryResult - Interface in org.geppetto.model.datasources
A representation of the model object 'AQuery Result'.
aQueryResultEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
AQueryResultImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'AQuery Result'.
AQueryResultImpl() - Constructor for class org.geppetto.model.datasources.impl.AQueryResultImpl
 
Argument - Interface in org.geppetto.model.values
A representation of the model object 'Argument'.
argument - Variable in class org.geppetto.model.values.impl.ArgumentImpl
The cached value of the 'Argument' attribute.
ARGUMENT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Argument' class.
ARGUMENT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Argument' class.
ARGUMENT__ARGUMENT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Argument' attribute.
ARGUMENT__ARGUMENT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Argument' attribute feature.
ARGUMENT__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
ARGUMENT_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ArgumentImpl
The default value of the 'Argument' attribute.
ARGUMENT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Argument' class.
ARGUMENT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Argument' class.
ARGUMENT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Argument Type' class.
ARGUMENT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Argument Type' class.
ARGUMENT_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
ARGUMENT_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
ARGUMENT_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
ARGUMENT_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
ARGUMENT_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
ARGUMENT_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
ARGUMENT_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
ARGUMENT_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
ARGUMENT_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
ARGUMENT_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
ARGUMENT_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
ARGUMENT_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
ARGUMENT_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
ARGUMENT_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
ARGUMENT_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Argument Type' class.
ARGUMENT_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Argument Type' class.
argumentEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ArgumentImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Argument'.
ArgumentImpl() - Constructor for class org.geppetto.model.values.impl.ArgumentImpl
 
arguments - Variable in class org.geppetto.model.values.impl.FunctionImpl
The cached value of the 'Arguments' containment reference list.
ArgumentType - Interface in org.geppetto.model.types
A representation of the model object 'Argument Type'.
argumentTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ArgumentTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Argument Type'.
ArgumentTypeImpl() - Constructor for class org.geppetto.model.types.impl.ArgumentTypeImpl
 
ARRAY_ELEMENT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Array Element' class.
ARRAY_ELEMENT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Array Element' class.
ARRAY_ELEMENT__INDEX - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Index' attribute.
ARRAY_ELEMENT__INDEX - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Index' attribute feature.
ARRAY_ELEMENT__INITIAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Initial Value' containment reference.
ARRAY_ELEMENT__INITIAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Initial Value' containment reference feature.
ARRAY_ELEMENT__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
ARRAY_ELEMENT__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Position' containment reference feature.
ARRAY_ELEMENT__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
ARRAY_ELEMENT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Array Element' class.
ARRAY_ELEMENT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Array Element' class.
ARRAY_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Array Type' class.
ARRAY_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Array Type' class.
ARRAY_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
ARRAY_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
ARRAY_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
ARRAY_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
ARRAY_TYPE__ARRAY_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Array Type' reference.
ARRAY_TYPE__ARRAY_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Array Type' reference feature.
ARRAY_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
ARRAY_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
ARRAY_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
ARRAY_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
ARRAY_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
ARRAY_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
ARRAY_TYPE__SIZE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Size' attribute.
ARRAY_TYPE__SIZE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Size' attribute feature.
ARRAY_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
ARRAY_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
ARRAY_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
ARRAY_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
ARRAY_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Array Type' class.
ARRAY_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Array Type' class.
ARRAY_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Array Value' class.
ARRAY_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Array Value' class.
ARRAY_VALUE__ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Elements' containment reference list.
ARRAY_VALUE__ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Elements' containment reference list feature.
ARRAY_VALUE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
ARRAY_VALUE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Array Value' class.
ARRAY_VALUE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Array Value' class.
ArrayElement - Interface in org.geppetto.model.values
A representation of the model object 'Array Element'.
arrayElementEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ArrayElementImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Array Element'.
ArrayElementImpl() - Constructor for class org.geppetto.model.values.impl.ArrayElementImpl
 
ArrayType - Interface in org.geppetto.model.types
A representation of the model object 'Array Type'.
arrayType - Variable in class org.geppetto.model.types.impl.ArrayTypeImpl
The cached value of the 'Array Type' reference.
arrayTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ArrayTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Array Type'.
ArrayTypeImpl() - Constructor for class org.geppetto.model.types.impl.ArrayTypeImpl
 
ArrayValue - Interface in org.geppetto.model.values
A representation of the model object 'Array Value'.
arrayValueEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ArrayValueImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Array Value'.
ArrayValueImpl() - Constructor for class org.geppetto.model.values.impl.ArrayValueImpl
 
AService - Class in org.geppetto.core.services
This abstract implementation allows services to implement different features.
AService() - Constructor for class org.geppetto.core.services.AService
 
ASimulator - Class in org.geppetto.core.simulator
 
ASimulator() - Constructor for class org.geppetto.core.simulator.ASimulator
 
ASPECT_PRECEDENCE - Static variable in class org.geppetto.persistence.db.BundleClassLoaderAspect
 
aspectConfiguration - Variable in class org.geppetto.core.simulator.ASimulator
 
AspectConfiguration - Class in org.geppetto.persistence.db.model
 
AspectConfiguration(String, List<String>, List<Parameter>, SimulatorConfiguration) - Constructor for class org.geppetto.persistence.db.model.AspectConfiguration
 
aspectConfigurations - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
aspectConfigurations - Variable in class org.geppetto.persistence.db.model.Experiment
 
aspectPath - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
authFailureRedirect() - Method in class org.geppetto.core.auth.DefaultAuthService
 
authFailureRedirect() - Method in interface org.geppetto.core.auth.IAuthService
 
authFailureRedirect() - Method in class org.geppetto.persistence.auth.GeppettoAuthentication
 
authorizeService() - Method in class org.geppetto.core.services.DropboxUploadService
 
authorizeURL - Variable in class org.geppetto.core.services.DropboxUploadService
 
AuthServiceCreator - Class in org.geppetto.frontend.controllers
 
AuthServiceCreator() - Constructor for class org.geppetto.frontend.controllers.AuthServiceCreator
 
autoresolve - Variable in class org.geppetto.model.types.impl.ImportTypeImpl
The cached value of the 'Autoresolve' attribute.
AUTORESOLVE_EDEFAULT - Static variable in class org.geppetto.model.types.impl.ImportTypeImpl
The default value of the 'Autoresolve' attribute.
AXONS_COLOR - Static variable in class org.geppetto.model.neuroml.visualUtils.ModelInterpreterVisualConstants
 

B

b - Variable in class org.geppetto.model.values.impl.ConnectionImpl
The cached value of the 'B' containment reference.
baseURL - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
baseURL - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
baseURL - Variable in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
basicGetArrayType() - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
basicGetDefaultValue() - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
basicGetDomainModel() - Method in class org.geppetto.model.types.impl.TypeImpl
 
basicGetLibrary() - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
basicGetReturnType() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
basicGetTargetLibrary() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
basicGetType() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
basicGetTypedKey() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
basicGetVariable() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
basicGetVisualType() - Method in class org.geppetto.model.types.impl.TypeImpl
 
basicSetA(Pointer, NotificationChain) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
basicSetB(Pointer, NotificationChain) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
basicSetDefaultValue(Argument, NotificationChain) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
basicSetDefaultValue(ArrayValue, NotificationChain) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
basicSetDefaultValue(Composite, NotificationChain) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
basicSetDefaultValue(Composite, NotificationChain) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
basicSetDefaultValue(Dynamics, NotificationChain) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
basicSetDefaultValue(Expression, NotificationChain) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
basicSetDefaultValue(HTML, NotificationChain) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
basicSetDefaultValue(Quantity, NotificationChain) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
basicSetDefaultValue(Pointer, NotificationChain) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
basicSetDefaultValue(Point, NotificationChain) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
basicSetDefaultValue(Quantity, NotificationChain) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
basicSetDefaultValue(Quantity, NotificationChain) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
basicSetDefaultValue(Text, NotificationChain) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
basicSetDefaultValue(URL, NotificationChain) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
basicSetDefaultValue(VisualValue, NotificationChain) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
basicSetDistal(Point, NotificationChain) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
basicSetDynamics(Function, NotificationChain) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
basicSetExpression(Expression, NotificationChain) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
basicSetFetchVariableQuery(Query, NotificationChain) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
basicSetFormat(ModelFormat, NotificationChain) - Method in class org.geppetto.model.impl.DomainModelImpl
 
basicSetFunctionPlot(FunctionPlot, NotificationChain) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
basicSetInitialCondition(PhysicalQuantity, NotificationChain) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
basicSetInitialValue(Value, NotificationChain) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
basicSetParameter(Quantity, NotificationChain) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
basicSetPoint(Point, NotificationChain) - Method in class org.geppetto.model.values.impl.PointerImpl
 
basicSetPointer(Pointer, NotificationChain) - Method in class org.geppetto.model.impl.VariableValueImpl
 
basicSetPosition(Point, NotificationChain) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
basicSetPosition(Point, NotificationChain) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
basicSetPosition(Point, NotificationChain) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
basicSetTypedValue(Value, NotificationChain) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
basicSetTypedValue(Value, NotificationChain) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
basicSetUnit(Unit, NotificationChain) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
basicSetUnit(Unit, NotificationChain) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
basicSetValue(Value, NotificationChain) - Method in class org.geppetto.model.impl.VariableValueImpl
 
BatchExperiment() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection.BatchExperiment
 
bc - Static variable in class org.geppetto.frontend.controllers.AuthServiceCreator
 
BIDIRECTIONAL_VALUE - Static variable in enum org.geppetto.model.values.Connectivity
The 'BIDIRECTIONAL' literal value.
BinaryMessageSender(byte[], OutboundMessages, int) - Constructor for class org.geppetto.frontend.messaging.DefaultMessageSender.BinaryMessageSender
 
BOOLEAN_OPERATOR - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Boolean Operator' enum.
BOOLEAN_OPERATOR - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Boolean Operator' enum.
BOOLEAN_OPERATOR_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.RunnableQueryImpl
The default value of the 'Boolean Operator' attribute.
BooleanOperator - Enum in org.geppetto.model.datasources
A representation of the literals of the enumeration 'Boolean Operator', and utility methods for working with them.
BooleanOperator(int, String, String) - Constructor for enum org.geppetto.model.datasources.BooleanOperator
Only this class can construct instances.
booleanOperator - Variable in class org.geppetto.model.datasources.impl.RunnableQueryImpl
The cached value of the 'Boolean Operator' attribute.
booleanOperatorEEnum - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
BOTTOM_RADIUS_EDEFAULT - Static variable in class org.geppetto.model.values.impl.CylinderImpl
The default value of the 'Bottom Radius' attribute.
bottomRadius - Variable in class org.geppetto.model.values.impl.CylinderImpl
The cached value of the 'Bottom Radius' attribute.
buildACNet2DemoProject(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
buildCustomizationFromType(Type, GeppettoLibrary) - Method in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
buildHHCellDemoProject(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
buildHHCellOpenCortex240CellsDemoProject(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
buildHHCellOpenCortex246CellsDemoProject(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
buildQuadraticMatrices(int, double[]) - Static method in class org.geppetto.core.utilities.MatrixBuilder
 
BundleClassLoaderAspect - Class in org.geppetto.persistence.db
Aspect for setting the correct class loader when invoking a method in the service layer.
BundleClassLoaderAspect() - Constructor for class org.geppetto.persistence.db.BundleClassLoaderAspect
 
bundleContext - Variable in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 

C

c302model(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
CA_ION - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
calculateDistanceInGroup(double, Segment) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
calculateStorage(long) - Method in class org.geppetto.frontend.admin.AdminServlet
 
cancelExperimentRun(String, IExperiment) - Method in interface org.geppetto.core.manager.IExperimentManager
 
cancelExperimentRun(IUser, IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
cancelExperimentRun(String, IExperiment) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
cancelRun() - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
canRead(Class<?>, MediaType) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
canvas - Variable in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
CanvasCustomisation - Class in org.geppetto.model.neuroml.features
 
CanvasCustomisation() - Constructor for class org.geppetto.model.neuroml.features.CanvasCustomisation
 
canWrite(Class<?>, MediaType) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
caseAQueryResult(AQueryResult) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'AQuery Result'.
caseArgument(Argument) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Argument'.
caseArgumentType(ArgumentType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Argument Type'.
caseArrayElement(ArrayElement) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Array Element'.
caseArrayType(ArrayType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Array Type'.
caseArrayValue(ArrayValue) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Array Value'.
caseCollada(Collada) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Collada'.
caseComposite(Composite) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Composite'.
caseCompositeType(CompositeType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Composite Type'.
caseCompositeVisualType(CompositeVisualType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Composite Visual Type'.
caseCompoundQuery(CompoundQuery) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Compound Query'.
caseCompoundRefQuery(CompoundRefQuery) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Compound Ref Query'.
caseConnection(Connection) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Connection'.
caseConnectionType(ConnectionType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Connection Type'.
caseCylinder(Cylinder) - Method in class org.geppetto.model.swc.test.SWCModelInterpreterTest.TestSwitch
 
caseCylinder(Cylinder) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Cylinder'.
caseDataSource(DataSource) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Data Source'.
caseDataSourceLibraryConfiguration(DataSourceLibraryConfiguration) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Data Source Library Configuration'.
caseDomainModel(DomainModel) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Domain Model'.
caseDynamics(Dynamics) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Dynamics'.
caseDynamicsType(DynamicsType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Dynamics Type'.
caseExperimentState(ExperimentState) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Experiment State'.
caseExpression(Expression) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Expression'.
caseExpressionType(ExpressionType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Expression Type'.
caseExternalDomainModel(ExternalDomainModel) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'External Domain Model'.
caseFunction(Function) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Function'.
caseFunctionPlot(FunctionPlot) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Function Plot'.
caseGeppettoLibrary(GeppettoLibrary) - Method in class org.geppetto.model.util.GeppettoPrinterSwitch.GGeppettoSwitch
 
caseGeppettoLibrary(GeppettoLibrary) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Library'.
caseGeppettoLibrary(GeppettoLibrary) - Method in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
caseGeppettoLibrary(GeppettoLibrary) - Method in class org.geppetto.simulation.visitor.PersistModelVisitor
 
caseGeppettoModel(GeppettoModel) - Method in class org.geppetto.model.util.GeppettoPrinterSwitch.GGeppettoSwitch
 
caseGeppettoModel(GeppettoModel) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Model'.
caseHTML(HTML) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'HTML'.
caseHTMLType(HTMLType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'HTML Type'.
caseImage(Image) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Image'.
caseImageType(ImageType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Image Type'.
caseImportType(ImportType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Import Type'.
caseImportType(ImportType) - Method in class org.geppetto.model.util.GeppettoPrinterSwitch.GTypesSwitch
 
caseImportType(ImportType) - Method in class org.geppetto.simulation.visitor.CreateModelInterpreterServicesVisitor
 
caseImportType(ImportType) - Method in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
caseImportType(ImportType) - Method in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
caseImportType(ImportType) - Method in class org.geppetto.simulation.visitor.PopulateModelReferencesVisitor
 
caseImportValue(ImportValue) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Import Value'.
caseISynchable(ISynchable) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'ISynchable'.
caseISynchable(ISynchable) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'ISynchable'.
caseISynchable(ISynchable) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'ISynchable'.
caseISynchable(ISynchable) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'ISynchable'.
caseISynchable(ISynchable) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Returns the result of interpreting the object as an instance of 'ISynchable'.
caseLibraryManager(LibraryManager) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Library Manager'.
caseMDTimeSeries(MDTimeSeries) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'MD Time Series'.
caseMetadataValue(MetadataValue) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Metadata Value'.
caseModelFormat(ModelFormat) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Model Format'.
caseNode(Node) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Node'.
caseNode(Node) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Node'.
caseNode(Node) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Node'.
caseNode(Node) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Node'.
caseNode(Node) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Returns the result of interpreting the object as an instance of 'Node'.
caseOBJ(OBJ) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'OBJ'.
caseParameterType(ParameterType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Parameter Type'.
caseParticles(Particles) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Particles'.
casePhysicalQuantity(PhysicalQuantity) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Physical Quantity'.
casePoint(Point) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Point'.
casePointer(Pointer) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Pointer'.
casePointerElement(PointerElement) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Pointer Element'.
casePointerType(PointerType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Pointer Type'.
casePointType(PointType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Point Type'.
caseProcessQuery(ProcessQuery) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Process Query'.
caseQuantity(Quantity) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Quantity'.
caseQuantityType(QuantityType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Quantity Type'.
caseQuery(Query) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Query'.
caseQueryMatchingCriteria(QueryMatchingCriteria) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Query Matching Criteria'.
caseQueryResult(QueryResult) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Query Result'.
caseQueryResults(QueryResults) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Query Results'.
caseRunnableQuery(RunnableQuery) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Runnable Query'.
caseSerializableQueryResult(SerializableQueryResult) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Serializable Query Result'.
caseSimpleQuery(SimpleQuery) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'Simple Query'.
caseSimpleType(SimpleType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Simple Type'.
caseSkeletonAnimation(SkeletonAnimation) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Skeleton Animation'.
caseSkeletonTransformation(SkeletonTransformation) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Skeleton Transformation'.
caseSphere(Sphere) - Method in class org.geppetto.model.swc.test.SWCModelInterpreterTest.TestSwitch
 
caseSphere(Sphere) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Sphere'.
caseStateVariableType(StateVariableType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'State Variable Type'.
caseStringToStringMap(Map.Entry<String, String>) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'String To String Map'.
caseStringToValueMap(Map.Entry<String, Value>) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'String To Value Map'.
caseTag(Tag) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Tag'.
caseText(Text) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Text'.
caseTextType(TextType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Text Type'.
caseTimeSeries(TimeSeries) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Time Series'.
caseType(Type) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Type'.
caseType(Type) - Method in class org.geppetto.model.util.GeppettoPrinterSwitch.GTypesSwitch
 
caseTypeToValueMap(Map.Entry<Type, Value>) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Returns the result of interpreting the object as an instance of 'Type To Value Map'.
caseUnit(Unit) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Unit'.
caseURL(URL) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'URL'.
caseURLType(URLType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'URL Type'.
caseValue(Value) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Value'.
caseVariable(Variable) - Method in class org.geppetto.model.util.GeppettoPrinterSwitch.GVariablesSwitch
 
caseVariable(Variable) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Returns the result of interpreting the object as an instance of 'Variable'.
caseVariableValue(VariableValue) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'Variable Value'.
caseVisualGroup(VisualGroup) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Visual Group'.
caseVisualGroupElement(VisualGroupElement) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Visual Group Element'.
caseVisualType(VisualType) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'Visual Type'.
caseVisualValue(VisualValue) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'Visual Value'.
cell - Variable in class org.geppetto.model.neuroml.utils.CellUtils
 
cell - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
cell - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
cellSegmentMap - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
CellUtils - Class in org.geppetto.model.neuroml.utils
 
CellUtils(Cell) - Constructor for class org.geppetto.model.neuroml.utils.CellUtils
 
cellUtils - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
channelDensityTag - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
check(Query, Variable) - Static method in class org.geppetto.core.datasources.QueryChecker
 
checkAllSimulatorsAreDone() - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
checkException(Object) - Static method in class org.geppetto.model.util.GeppettoModelTraversal
 
checkExperiment(IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
checkExperimentsStatus(String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IProjectManager
 
checkExperimentsStatus(String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
checkExperimentStatus(String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
checkJobStatus(CiJob) - Static method in class org.geppetto.simulator.remote.services.NSGUtilities
 
checkParent(String, Group) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Checks if the parent has already the group we intend to create inside itself
checkSupportedFormat(ModelFormat) - Method in class org.geppetto.core.conversion.AConversion
 
checkUserPrivileges(String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
Sends to the client login user privileges
checkValues(VariableValue, int) - Method in class org.geppetto.simulation.test.GeppettoManagerTest
 
cleanJsonObject(JsonObject) - Method in class org.geppetto.simulation.utilities.GeppettoProjectZipper
 
cleanLEMSNeuroMLDocument(String) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
cleanLEMSNeuroMLDocument(String) - Method in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
clearWatchedVariables(IAspectConfiguration) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
clearWatchedVariables(IAspectConfiguration) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
clearWatchedVariables(IAspectConfiguration) - Method in class org.geppetto.persistence.GeppettoDataManager
 
client - Variable in class org.geppetto.core.services.DropboxUploadService
 
cloneExperiment(String, String, IGeppettoProject, IExperiment) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
cloneExperiment(String, String, IGeppettoProject, IExperiment) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
cloneExperiment(String, IGeppettoProject, IExperiment) - Method in interface org.geppetto.core.manager.IExperimentManager
Clones a experiment inside a given project
cloneExperiment(String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
cloneExperiment(String, String, IGeppettoProject, IExperiment) - Method in class org.geppetto.persistence.GeppettoDataManager
 
cloneExperiment(String, IGeppettoProject, IExperiment) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
closeExperiment(IExperiment) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
closeNWBFile(H5File) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
closeProject(String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IProjectManager
Closes a Geppetto project
closeProject() - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
closeProject(String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
closeRecording() - Method in class org.geppetto.core.simulator.RecordingReader
 
Collada - Interface in org.geppetto.model.values
A representation of the model object 'Collada'.
collada - Variable in class org.geppetto.model.values.impl.ColladaImpl
The cached value of the 'Collada' attribute.
COLLADA - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Collada' class.
COLLADA - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Collada' class.
COLLADA__COLLADA - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Collada' attribute.
COLLADA__COLLADA - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Collada' attribute feature.
COLLADA__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Group Elements' reference list.
COLLADA__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
COLLADA__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
COLLADA_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ColladaImpl
The default value of the 'Collada' attribute.
COLLADA_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Collada' class.
COLLADA_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Collada' class.
colladaEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ColladaImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Collada'.
ColladaImpl() - Constructor for class org.geppetto.model.values.impl.ColladaImpl
 
ColladaModelInterpreterService - Class in org.geppetto.core.model.services
 
ColladaModelInterpreterService() - Constructor for class org.geppetto.core.model.services.ColladaModelInterpreterService
 
ColladaVisualTreeFeature - Class in org.geppetto.core.model.services
 
ColladaVisualTreeFeature() - Constructor for class org.geppetto.core.model.services.ColladaVisualTreeFeature
 
colorMap - Variable in class org.geppetto.model.neuroml.features.CanvasCustomisation
 
commands - Variable in class org.geppetto.core.simulator.AExternalProcessSimulator
 
commonLibrary - Static variable in class org.geppetto.core.manager.SharedLibraryManager
 
commonlibrary - Variable in class org.geppetto.core.model.GeppettoModelAccess
 
commonLibraryAccess - Variable in class org.geppetto.model.nwb.ReadNWBFile
 
compareGeneratedDomainModel(DomainModel, String) - Method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
compile() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
Runs a process specified by the command passed in as a parameter
componentSpecific - Variable in class org.geppetto.model.neuroml.features.CanvasCustomisation
 
Composite - Interface in org.geppetto.model.values
A representation of the model object 'Composite'.
COMPOSITE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Composite' class.
COMPOSITE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Composite' class.
COMPOSITE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
COMPOSITE__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Value' map.
COMPOSITE__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Value' map feature.
COMPOSITE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Composite' class.
COMPOSITE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Composite' class.
COMPOSITE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Composite Type' class.
COMPOSITE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Composite Type' class.
COMPOSITE_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
COMPOSITE_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
COMPOSITE_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
COMPOSITE_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
COMPOSITE_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
COMPOSITE_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
COMPOSITE_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
COMPOSITE_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
COMPOSITE_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
COMPOSITE_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
COMPOSITE_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
COMPOSITE_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
COMPOSITE_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
COMPOSITE_TYPE__VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Variables' containment reference list.
COMPOSITE_TYPE__VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Variables' containment reference list feature.
COMPOSITE_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
COMPOSITE_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Composite Type' class.
COMPOSITE_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Composite Type' class.
COMPOSITE_VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Composite Visual Type' class.
COMPOSITE_VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Composite Visual Type' class.
COMPOSITE_VISUAL_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
COMPOSITE_VISUAL_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
COMPOSITE_VISUAL_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
COMPOSITE_VISUAL_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
COMPOSITE_VISUAL_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
COMPOSITE_VISUAL_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
COMPOSITE_VISUAL_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
COMPOSITE_VISUAL_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
COMPOSITE_VISUAL_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
COMPOSITE_VISUAL_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
COMPOSITE_VISUAL_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
COMPOSITE_VISUAL_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
COMPOSITE_VISUAL_TYPE__VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Variables' containment reference list.
COMPOSITE_VISUAL_TYPE__VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Variables' containment reference list feature.
COMPOSITE_VISUAL_TYPE__VISUAL_GROUPS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Groups' containment reference list.
COMPOSITE_VISUAL_TYPE__VISUAL_GROUPS - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Visual Groups' containment reference list feature.
COMPOSITE_VISUAL_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
COMPOSITE_VISUAL_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Composite Visual Type' class.
COMPOSITE_VISUAL_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Composite Visual Type' class.
compositeEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
CompositeImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Composite'.
CompositeImpl() - Constructor for class org.geppetto.model.values.impl.CompositeImpl
 
CompositeType - Interface in org.geppetto.model.types
A representation of the model object 'Composite Type'.
compositeTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
CompositeTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Composite Type'.
CompositeTypeImpl() - Constructor for class org.geppetto.model.types.impl.CompositeTypeImpl
 
CompositeVisualType - Interface in org.geppetto.model.types
A representation of the model object 'Composite Visual Type'.
compositeVisualTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
CompositeVisualTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Composite Visual Type'.
CompositeVisualTypeImpl() - Constructor for class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
COMPOUND_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Compound Query' class.
COMPOUND_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Compound Query' class.
COMPOUND_QUERY___GET_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Path' operation.
COMPOUND_QUERY__DESCRIPTION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Description' attribute.
COMPOUND_QUERY__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
COMPOUND_QUERY__MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Matching Criteria' containment reference list.
COMPOUND_QUERY__NAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Name' attribute.
COMPOUND_QUERY__QUERY_CHAIN - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Query Chain' containment reference list.
COMPOUND_QUERY__QUERY_CHAIN - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Chain' containment reference list feature.
COMPOUND_QUERY__RETURN_TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Return Type' reference.
COMPOUND_QUERY__RUN_FOR_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Run For Count' attribute.
COMPOUND_QUERY__SYNCHED - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Synched' attribute.
COMPOUND_QUERY__TAGS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Tags' reference list.
COMPOUND_QUERY_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Compound Query' class.
COMPOUND_QUERY_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Compound Query' class.
COMPOUND_REF_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Compound Ref Query' class.
COMPOUND_REF_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Compound Ref Query' class.
COMPOUND_REF_QUERY___GET_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Path' operation.
COMPOUND_REF_QUERY__DESCRIPTION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Description' attribute.
COMPOUND_REF_QUERY__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
COMPOUND_REF_QUERY__MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Matching Criteria' containment reference list.
COMPOUND_REF_QUERY__NAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Name' attribute.
COMPOUND_REF_QUERY__QUERY_CHAIN - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Query Chain' reference list.
COMPOUND_REF_QUERY__QUERY_CHAIN - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Chain' reference list feature.
COMPOUND_REF_QUERY__RETURN_TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Return Type' reference.
COMPOUND_REF_QUERY__RUN_FOR_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Run For Count' attribute.
COMPOUND_REF_QUERY__SYNCHED - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Synched' attribute.
COMPOUND_REF_QUERY__TAGS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Tags' reference list.
COMPOUND_REF_QUERY_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Compound Ref Query' class.
COMPOUND_REF_QUERY_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Compound Ref Query' class.
CompoundQuery - Interface in org.geppetto.model.datasources
A representation of the model object 'Compound Query'.
compoundQueryEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
CompoundQueryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Compound Query'.
CompoundQueryImpl() - Constructor for class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
CompoundRefQuery - Interface in org.geppetto.model.datasources
A representation of the model object 'Compound Ref Query'.
compoundRefQueryEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
CompoundRefQueryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Compound Ref Query'.
CompoundRefQueryImpl() - Constructor for class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
compressionEnabled - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
If true then compress messages.
compressionEnabled - Variable in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
CompressionUtils - Class in org.geppetto.frontend.messaging
Some utilities for compressing strings and byte arrays via Gzip.
CompressionUtils() - Constructor for class org.geppetto.frontend.messaging.CompressionUtils
 
config - Variable in class org.geppetto.core.services.DropboxUploadService
 
ConflictStrategy() - Constructor for enum org.geppetto.simulation.manager.ViewProcessor.ConflictStrategy
 
Connection - Interface in org.geppetto.model.values
A representation of the model object 'Connection'.
CONNECTION - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Connection' class.
CONNECTION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Connection' class.
CONNECTION__A - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'A' containment reference.
CONNECTION__A - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'A' containment reference feature.
CONNECTION__B - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'B' containment reference.
CONNECTION__B - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'B' containment reference feature.
CONNECTION__CONNECTIVITY - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Connectivity' attribute.
CONNECTION__CONNECTIVITY - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Connectivity' attribute feature.
CONNECTION__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
CONNECTION_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Connection' class.
CONNECTION_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Connection' class.
CONNECTION_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Connection Type' class.
CONNECTION_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Connection Type' class.
CONNECTION_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
CONNECTION_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
CONNECTION_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
CONNECTION_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
CONNECTION_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
CONNECTION_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
CONNECTION_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
CONNECTION_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
CONNECTION_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
CONNECTION_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
CONNECTION_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
CONNECTION_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
CONNECTION_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
CONNECTION_TYPE__VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Variables' containment reference list.
CONNECTION_TYPE__VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Variables' containment reference list feature.
CONNECTION_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
CONNECTION_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Connection Type' class.
CONNECTION_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Connection Type' class.
connectionEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ConnectionHandler - Class in org.geppetto.frontend.controllers
Class that handles the Web Socket connections the servlet is receiving.
ConnectionHandler(WebsocketConnection, IGeppettoManager) - Constructor for class org.geppetto.frontend.controllers.ConnectionHandler
 
connectionHandler - Variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
ConnectionHandler.Error - Class in org.geppetto.frontend.controllers
 
ConnectionHandler.PersistedProject - Class in org.geppetto.frontend.controllers
 
ConnectionHandler.UserPrivilegesDT - Class in org.geppetto.frontend.controllers
 
connectionID - Variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
ConnectionImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Connection'.
ConnectionImpl() - Constructor for class org.geppetto.model.values.impl.ConnectionImpl
 
connectionsCounter - Variable in class org.geppetto.frontend.controllers.ConnectionsManager
 
ConnectionsManager - Class in org.geppetto.frontend.controllers
 
ConnectionsManager() - Constructor for class org.geppetto.frontend.controllers.ConnectionsManager
 
connectionsManager - Static variable in class org.geppetto.frontend.controllers.ConnectionsManager
 
ConnectionType - Interface in org.geppetto.model.types
A representation of the model object 'Connection Type'.
connectionTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ConnectionTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Connection Type'.
ConnectionTypeImpl() - Constructor for class org.geppetto.model.types.impl.ConnectionTypeImpl
 
Connectivity - Enum in org.geppetto.model.values
A representation of the literals of the enumeration 'Connectivity', and utility methods for working with them.
Connectivity(int, String, String) - Constructor for enum org.geppetto.model.values.Connectivity
Only this class can construct instances.
connectivity - Variable in class org.geppetto.model.values.impl.ConnectionImpl
The cached value of the 'Connectivity' attribute.
CONNECTIVITY - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Connectivity' enum.
CONNECTIVITY - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Connectivity' enum.
CONNECTIVITY_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ConnectionImpl
The default value of the 'Connectivity' attribute.
connectivityEEnum - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ConversionException - Exception in org.geppetto.core.conversion
 
ConversionException(String) - Constructor for exception org.geppetto.core.conversion.ConversionException
 
ConversionException(Throwable) - Constructor for exception org.geppetto.core.conversion.ConversionException
 
conversionServiceId - Variable in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
conversionServiceId - Variable in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
ConversionServiceKey(ModelFormat, ModelFormat) - Constructor for class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
conversionServices - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
convert(DomainModel, ModelFormat, IAspectConfiguration, GeppettoModelAccess) - Method in interface org.geppetto.core.conversion.IConversion
 
convert(ExperimentState) - Method in class org.geppetto.core.recordings.ConvertDATToRecording
Convert DAT to HDF5, does it for all .dat on the map
convert(DomainModel, ModelFormat, IAspectConfiguration, GeppettoModelAccess) - Method in class org.geppetto.core.TestConversion
 
convert(DomainModel, ModelFormat, IAspectConfiguration, GeppettoModelAccess) - Method in class org.geppetto.core.TestConversion2
 
convert(DomainModel, ModelFormat, IAspectConfiguration, GeppettoModelAccess) - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
convertBooleanOperatorToString(EDataType, Object) - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
convertConnectivityToString(EDataType, Object) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
ConvertDATToRecording - Class in org.geppetto.core.recordings
Converts a DAT file into a recording HDF5 file
ConvertDATToRecording(String, GeppettoModelAccess) - Constructor for class org.geppetto.core.recordings.ConvertDATToRecording
 
convertedResultsPath - Static variable in class org.geppetto.core.beans.PathConfiguration
 
convertFileFormatToString(EDataType, Object) - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
convertImageFormatToString(EDataType, Object) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
convertModel - Variable in class org.geppetto.core.conversion.AConversion
 
convertModelTo(LEMSConversionService, DomainModel, String, String) - Method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
convertRunnableQueriesDataTransferModel(List<WebsocketConnection.RunnableQueryDT>) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
convertToString(EDataType, Object) - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
convertToString(EDataType, Object) - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
convertToString(EDataType, Object) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
COUNT_QUERY_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.SimpleQueryImpl
The default value of the 'Count Query' attribute.
countQuery - Variable in class org.geppetto.model.datasources.impl.SimpleQueryImpl
The cached value of the 'Count Query' attribute.
create() - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Create new HDF5File for recordings, or retrieve existing one with same name.
create(EClass) - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
create(EClass) - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
create(EClass) - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
create(EClass) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
create(EClass) - Method in class org.geppetto.model.variables.impl.VariablesFactoryImpl
 
createAdapter(Notifier) - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates an adapter for the target.
createAdapter(Notifier) - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates an adapter for the target.
createAdapter(Notifier) - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates an adapter for the target.
createAdapter(Notifier) - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates an adapter for the target.
createAdapter(Notifier) - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates an adapter for the target.
createAQueryResultAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'AQuery Result'.
createArgument() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createArgument() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Argument'.
createArgumentAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Argument'.
createArgumentType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createArgumentType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Argument Type'.
createArgumentTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Argument Type'.
createArrayElement() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createArrayElement() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Array Element'.
createArrayElementAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Array Element'.
createArrayType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createArrayType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Array Type'.
createArrayTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Array Type'.
createArrayValue() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createArrayValue() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Array Value'.
createArrayValueAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Array Value'.
createAttributes(String, String, Dataset) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Adds attributes to dataset.
createBooleanOperatorFromString(EDataType, String) - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createCellPartsVisualGroups() - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
Gets all segments group from cell.
createCellsHTMLVariable() - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Create Variable with HTML value for a Cell
createChannelDensities() - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
Create Channel densities visual groups for a cell
createChannelsHTMLVariable() - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
createCollada() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createCollada() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Collada'.
createColladaAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Collada'.
createCommands(String) - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
Creates command to be executed by an external process
createCommands(String) - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
Creates command to be executed by an external process
createCommands(String) - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
Creates command to be executed by an external process
createCommands(String) - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
Creates command to be executed by an external process
createComposite() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createComposite() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Composite'.
createCompositeAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Composite'.
createCompositeType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createCompositeType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Composite Type'.
createCompositeTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Composite Type'.
createCompositeTypeFromAnnotation(CompositeType, Component, GeppettoModelAccess) - Static method in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
createCompositeVisualType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createCompositeVisualType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Composite Visual Type'.
createCompositeVisualTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Composite Visual Type'.
createCompoundQuery() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Compound Query'.
createCompoundQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createCompoundQueryAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Compound Query'.
createCompoundRefQuery() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Compound Ref Query'.
createCompoundRefQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createCompoundRefQueryAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Compound Ref Query'.
createConnection() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createConnection() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Connection'.
createConnectionAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Connection'.
createConnectionType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createConnectionType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Connection Type'.
createConnectionTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Connection Type'.
createConnectivityFromString(EDataType, String) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createCylinder() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createCylinder() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Cylinder'.
createCylinderAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Cylinder'.
createDataSet(RecordingObject, Group, String) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Stores data in a dataset object.
createDataSource() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Data Source'.
createDataSource() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createDataSourceAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Data Source'.
createDataSourceLibraryConfiguration() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Data Source Library Configuration'.
createDataSourceLibraryConfiguration() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createDataSourceLibraryConfigurationAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Data Source Library Configuration'.
createDomainModel() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Domain Model'.
createDomainModel() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createDomainModel(URL, String) - Method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
createDomainModelAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Domain Model'.
createDynamics() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createDynamics() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Dynamics'.
createDynamicsAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Dynamics'.
createDynamicsType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createDynamicsType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Dynamics Type'.
createDynamicsTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Dynamics Type'.
createEObjectAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for the default case.
createEObjectAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for the default case.
createEObjectAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for the default case.
createEObjectAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for the default case.
createEObjectAdapter() - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates a new adapter for the default case.
createExperimentState() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Experiment State'.
createExperimentState() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createExperimentStateAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Experiment State'.
createExperimentTmpPath(Scope, long, long, String, String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
createExposureTypeVariable(String, String, GeppettoModelAccess) - Static method in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
createExpression() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createExpression() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Expression'.
createExpressionAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Expression'.
createExpressionType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createExpressionType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Expression Type'.
createExpressionTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Expression Type'.
createExternalDomainModel() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'External Domain Model'.
createExternalDomainModel() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createExternalDomainModelAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'External Domain Model'.
createFileFormatFromString(EDataType, String) - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createFolderInExperimentTmpFolder(Scope, long, long, String, String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
createFolderInProjectTmpFolder(Scope, long, String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
createFromString(EDataType, String) - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createFromString(EDataType, String) - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createFromString(EDataType, String) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createFunction() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createFunction() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Function'.
createFunctionAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Function'.
createFunctionPlot() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createFunctionPlot() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Function Plot'.
createFunctionPlotAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Function Plot'.
createGeppettoLibrary() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Library'.
createGeppettoLibrary() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createGeppettoLibraryAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Library'.
createGeppettoModel() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Model'.
createGeppettoModel() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createGeppettoModelAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Model'.
createGroup(Group, String, String, Group) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Creates a part of the variable, a Group member object.
createHDF5File() - Method in class org.geppetto.core.TestHDFBindings
 
createHTML() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createHTML() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'HTML'.
createHTMLAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'HTML'.
createHTMLType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createHTMLType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'HTML Type'.
createHTMLTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'HTML Type'.
createHTMLVariables() - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Creates all HTML variables for objects in maps.
createImage() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createImage() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Image'.
createImageAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Image'.
createImageFormatFromString(EDataType, String) - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createImageType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createImageType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Image Type'.
createImageTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Image Type'.
createImportType(String) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
createImportType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createImportType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Import Type'.
createImportTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Import Type'.
createImportValue() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createImportValue() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Import Value'.
createImportValueAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Import Value'.
createInputsHTMLVariable() - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
createIonChannelExpression(IonChannel) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
createISynchableAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'ISynchable'.
createISynchableAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'ISynchable'.
createISynchableAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'ISynchable'.
createISynchableAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'ISynchable'.
createISynchableAdapter() - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates a new adapter for an object of class 'ISynchable'.
createLibraryManager() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Library Manager'.
createLibraryManager() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createLibraryManagerAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Library Manager'.
createLocalCopy(Scope, long, URL, boolean) - Static method in class org.geppetto.core.utilities.URLReader
This method copies the file pointed by the remote URL locally to the server Since this method essentially creates a temporary file in the server that will need to be cleared we have additional information to define the scope and the id of the project
createMDTimeSeries() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createMDTimeSeries() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'MD Time Series'.
createMDTimeSeriesAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'MD Time Series'.
createMetadataValueAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Metadata Value'.
createModel(ExperimentState, GeppettoModel) - Method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
createModel(ExperimentState, GeppettoModel) - Method in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
createModel(ExperimentState, GeppettoModel) - Method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
createModelFormat() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Model Format'.
createModelFormat() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createModelFormatAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Model Format'.
CreateModelInterpreterServicesVisitor - Class in org.geppetto.simulation.visitor
This visitor discovers and instantiates the services for each model interpreter.
CreateModelInterpreterServicesVisitor(Map<GeppettoLibrary, IModelInterpreter>, long, Scope) - Constructor for class org.geppetto.simulation.visitor.CreateModelInterpreterServicesVisitor
 
createNodeAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Node'.
createNodeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Node'.
createNodeAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Node'.
createNodeAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Node'.
createNodeAdapter() - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates a new adapter for an object of class 'Node'.
createNodesFromMorphologyBySegmentGroup() - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
createOBJ() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createOBJ() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'OBJ'.
createOBJAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'OBJ'.
createPackageContents() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
Creates the meta-model objects for the package.
createPackageContents() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
Creates the meta-model objects for the package.
createPackageContents() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
Creates the meta-model objects for the package.
createPackageContents() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
Creates the meta-model objects for the package.
createPackageContents() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
Creates the meta-model objects for the package.
createParameterType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createParameterType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Parameter Type'.
createParameterTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Parameter Type'.
createParameterTypeVariable(String, String, GeppettoModelAccess) - Static method in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
createParticles() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createParticles() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Particles'.
createParticlesAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Particles'.
createPhysicalQuantity() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createPhysicalQuantity() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Physical Quantity'.
createPhysicalQuantityAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Physical Quantity'.
createPoint() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createPoint() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Point'.
createPointAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Point'.
createPointer() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createPointer() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Pointer'.
createPointerAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Pointer'.
createPointerElement() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createPointerElement() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Pointer Element'.
createPointerElementAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Pointer Element'.
createPointerType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createPointerType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Pointer Type'.
createPointerTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Pointer Type'.
createPointType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createPointType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Point Type'.
createPointTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Point Type'.
createPopulationTypeVariable(Component) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
createProcessQuery() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Process Query'.
createProcessQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createProcessQueryAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Process Query'.
createProjectionImportType(Component, CompositeType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
createProjectionType(Component, CompositeType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
createProjectTmpFolder(Scope, long, String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
createQuantity() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createQuantity() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Quantity'.
createQuantityAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Quantity'.
createQuantityType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createQuantityType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Quantity Type'.
createQuantityTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Quantity Type'.
createQueryAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Query'.
createQueryMatchingCriteria() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Query Matching Criteria'.
createQueryMatchingCriteria() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createQueryMatchingCriteriaAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Query Matching Criteria'.
createQueryResult() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Query Result'.
createQueryResult() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createQueryResultAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Query Result'.
createQueryResults() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Query Results'.
createQueryResults() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createQueryResultsAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Query Results'.
createResource(URI) - Method in class org.geppetto.model.util.GeppettoResourceFactoryImpl
Creates an instance of the resource.
createRunnableQuery() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Runnable Query'.
createRunnableQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createRunnableQueryAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Runnable Query'.
createSerializableQueryResult() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Serializable Query Result'.
createSerializableQueryResult() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createSerializableQueryResultAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Serializable Query Result'.
createSimpleQuery() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns a new object of class 'Simple Query'.
createSimpleQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
createSimpleQueryAdapter() - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates a new adapter for an object of class 'Simple Query'.
createSimpleType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createSimpleType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Simple Type'.
createSimpleTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Simple Type'.
createSkeletonAnimation() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createSkeletonAnimation() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Skeleton Animation'.
createSkeletonAnimationAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Skeleton Animation'.
createSkeletonTransformation() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createSkeletonTransformation() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Skeleton Transformation'.
createSkeletonTransformationAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Skeleton Transformation'.
createSphere() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createSphere() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Sphere'.
createSphereAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Sphere'.
createStateVariableType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createStateVariableType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'State Variable Type'.
createStateVariableTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'State Variable Type'.
createStringToStringMap() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createStringToStringMapAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'String To String Map'.
createStringToValueMap() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createStringToValueMapAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'String To Value Map'.
createSynapsesHTMLVariable() - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
createSynapseType(Component) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
createTag() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Tag'.
createTag() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createTagAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Tag'.
createText() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createText() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Text'.
createTextAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Text'.
createTextType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createTextType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Text Type'.
createTextTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Text Type'.
createTextTypeVariable(String, String, GeppettoModelAccess) - Static method in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
createTextVariable(String, String, String) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
createTimeSeries() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createTimeSeries() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Time Series'.
createTimeSeriesAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Time Series'.
createTransportMessage(String, String, List<AbstractMap.SimpleEntry<String, String>>) - Static method in class org.geppetto.frontend.messages.TransportMessageFactory
Create JSON object with type and parameters
createType(String) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
createTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Type'.
createTypeFromCellMorphology() - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
createTypeToValueMap() - Method in class org.geppetto.model.variables.impl.VariablesFactoryImpl
 
createTypeToValueMapAdapter() - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates a new adapter for an object of class 'Type To Value Map'.
createUnit() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createUnit() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Unit'.
createUnitAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Unit'.
createURL() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createURL() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'URL'.
createURLAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'URL'.
createURLType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createURLType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'URL Type'.
createURLTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'URL Type'.
createValueAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Value'.
createVariable() - Method in class org.geppetto.model.variables.impl.VariablesFactoryImpl
 
createVariable() - Method in interface org.geppetto.model.variables.VariablesFactory
Returns a new object of class 'Variable'.
createVariableAdapter() - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates a new adapter for an object of class 'Variable'.
createVariableValue() - Method in interface org.geppetto.model.GeppettoFactory
Returns a new object of class 'Variable Value'.
createVariableValue() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
createVariableValueAdapter() - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Creates a new adapter for an object of class 'Variable Value'.
createVisualGroup(Map<String, VisualGroup>, String) - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
createVisualGroup() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createVisualGroup() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Visual Group'.
createVisualGroupAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Visual Group'.
createVisualGroupElement(Map<String, VisualGroup>, Tag, String, String, List<VariableParameter>) - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
createVisualGroupElement() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
createVisualGroupElement() - Method in interface org.geppetto.model.values.ValuesFactory
Returns a new object of class 'Visual Group Element'.
createVisualGroupElementAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Visual Group Element'.
createVisualGroupElementFromSegmentGroup(String, String, VisualGroup) - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
createVisualGroupFromCondDensity(Map<String, VisualGroup>, Tag, Base, String, String, String) - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
createVisualType() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
createVisualType() - Method in interface org.geppetto.model.types.TypesFactory
Returns a new object of class 'Visual Type'.
createVisualTypeAdapter() - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Creates a new adapter for an object of class 'Visual Type'.
createVisualTypeFromMorphology(Component, CompositeType, Component) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
createVisualValueAdapter() - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Creates a new adapter for an object of class 'Visual Value'.
createWebSocketInbound(String, HttpServletRequest) - Method in class org.geppetto.frontend.controllers.GeppettoServlet
 
creationDate - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
creationDate - Variable in class org.geppetto.persistence.db.model.Experiment
 
currentRecordingIndex - Variable in class org.geppetto.core.simulator.RecordingReader
 
customTypeSerializer - Static variable in class org.geppetto.core.model.GeppettoSerializer
 
Cylinder - Interface in org.geppetto.model.values
A representation of the model object 'Cylinder'.
CYLINDER - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Cylinder' class.
CYLINDER - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Cylinder' class.
CYLINDER__BOTTOM_RADIUS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Bottom Radius' attribute.
CYLINDER__BOTTOM_RADIUS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Bottom Radius' attribute feature.
CYLINDER__DISTAL - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Distal' containment reference.
CYLINDER__DISTAL - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Distal' containment reference feature.
CYLINDER__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Group Elements' reference list.
CYLINDER__HEIGHT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Height' attribute.
CYLINDER__HEIGHT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Height' attribute feature.
CYLINDER__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
CYLINDER__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
CYLINDER__TOP_RADIUS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Top Radius' attribute.
CYLINDER__TOP_RADIUS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Top Radius' attribute feature.
CYLINDER_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Cylinder' class.
CYLINDER_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Cylinder' class.
cylinderEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
CylinderImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Cylinder'.
CylinderImpl() - Constructor for class org.geppetto.model.values.impl.CylinderImpl
 

D

data - Variable in class org.geppetto.frontend.messages.GeppettoTransportMessage
 
data - Variable in class org.geppetto.model.values.impl.ImageImpl
The cached value of the 'Data' attribute.
DATA_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ImageImpl
The default value of the 'Data' attribute.
DATA_SOURCE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Data Source' class.
DATA_SOURCE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Data Source' class.
DATA_SOURCE___GET_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Path' operation.
DATA_SOURCE__DATA_SOURCE_SERVICE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Data Source Service' attribute.
DATA_SOURCE__DATA_SOURCE_SERVICE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Data Source Service' attribute feature.
DATA_SOURCE__DEPENDENCIES_LIBRARY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Dependencies Library' reference list.
DATA_SOURCE__DEPENDENCIES_LIBRARY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Dependencies Library' reference list feature.
DATA_SOURCE__FETCH_VARIABLE_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Fetch Variable Query' containment reference.
DATA_SOURCE__FETCH_VARIABLE_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Fetch Variable Query' containment reference feature.
DATA_SOURCE__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
DATA_SOURCE__LIBRARY_CONFIGURATIONS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Library Configurations' containment reference list.
DATA_SOURCE__LIBRARY_CONFIGURATIONS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Library Configurations' containment reference list feature.
DATA_SOURCE__NAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Name' attribute.
DATA_SOURCE__QUERIES - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Queries' containment reference list.
DATA_SOURCE__QUERIES - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Queries' containment reference list feature.
DATA_SOURCE__SYNCHED - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Synched' attribute.
DATA_SOURCE__TAGS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Tags' reference list.
DATA_SOURCE__TARGET_LIBRARY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Target Library' reference.
DATA_SOURCE__TARGET_LIBRARY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Target Library' reference feature.
DATA_SOURCE__URL - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Url' attribute.
DATA_SOURCE__URL - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Url' attribute feature.
DATA_SOURCE_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Data Source' class.
DATA_SOURCE_LIBRARY_CONFIGURATION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Data Source Library Configuration' class.
DATA_SOURCE_LIBRARY_CONFIGURATION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Data Source Library Configuration' class.
DATA_SOURCE_LIBRARY_CONFIGURATION__FORMAT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Format' attribute.
DATA_SOURCE_LIBRARY_CONFIGURATION__FORMAT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Format' attribute feature.
DATA_SOURCE_LIBRARY_CONFIGURATION__LIBRARY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Library' reference.
DATA_SOURCE_LIBRARY_CONFIGURATION__LIBRARY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Library' reference feature.
DATA_SOURCE_LIBRARY_CONFIGURATION__MODEL_INTERPRETER_ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Model Interpreter Id' attribute.
DATA_SOURCE_LIBRARY_CONFIGURATION__MODEL_INTERPRETER_ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Model Interpreter Id' attribute feature.
DATA_SOURCE_LIBRARY_CONFIGURATION_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Data Source Library Configuration' class.
DATA_SOURCE_LIBRARY_CONFIGURATION_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Data Source Library Configuration' class.
DATA_SOURCE_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Data Source' class.
DATA_SOURCE_SERVICE_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The default value of the 'Data Source Service' attribute.
dataManager - Static variable in class org.geppetto.core.data.DataManagerHelper
 
dataManager - Variable in class org.geppetto.persistence.db.DBManagerTest
 
DataManagerHelper - Class in org.geppetto.core.data
 
DataManagerHelper() - Constructor for class org.geppetto.core.data.DataManagerHelper
 
DataManagerServiceCreator - Class in org.geppetto.core.data
 
DataManagerServiceCreator(String) - Constructor for class org.geppetto.core.data.DataManagerServiceCreator
 
DataSource - Interface in org.geppetto.model.datasources
A representation of the model object 'Data Source'.
dataSourceEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
dataSourceId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
DataSourceImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Data Source'.
DataSourceImpl() - Constructor for class org.geppetto.model.datasources.impl.DataSourceImpl
 
DataSourceLibraryConfiguration - Interface in org.geppetto.model.datasources
A representation of the model object 'Data Source Library Configuration'.
dataSourceLibraryConfigurationEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
DataSourceLibraryConfigurationImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Data Source Library Configuration'.
DataSourceLibraryConfigurationImpl() - Constructor for class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
dataSources - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Data Sources' containment reference list.
DatasourcesAdapterFactory - Class in org.geppetto.model.datasources.util
The Adapter Factory for the model.
DatasourcesAdapterFactory() - Constructor for class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Creates an instance of the adapter factory.
dataSourceService - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Data Source Service' attribute.
dataSourceServices - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
DatasourcesFactory - Interface in org.geppetto.model.datasources
The Factory for the model.
DatasourcesFactoryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model Factory.
DatasourcesFactoryImpl() - Constructor for class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
Creates an instance of the factory.
DatasourcesPackage - Interface in org.geppetto.model.datasources
The Package for the model.
DatasourcesPackage.Literals - Interface in org.geppetto.model.datasources
Defines literals for the meta objects that represent each class, each feature of each class, each operation of each class, each enum, and each data type
DatasourcesPackageImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model Package.
DatasourcesPackageImpl() - Constructor for class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
Creates an instance of the model Package, registered with EPackage.Registry by the package package URI value.
DatasourcesSwitch<T> - Class in org.geppetto.model.datasources.util
The Switch for the model's inheritance hierarchy.
DatasourcesSwitch() - Constructor for class org.geppetto.model.datasources.util.DatasourcesSwitch
Creates an instance of the switch.
datFilePaths - Variable in class org.geppetto.core.recordings.ConvertDATToRecording
 
datToHDF5() - Method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
datToHDF5() - Method in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
datToHDF5() - Method in class org.geppetto.core.TestConvertDATToRecordingClass
 
datToHDF5() - Method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
daysAgo(Date, Date) - Method in class org.geppetto.frontend.admin.AdminServlet
 
db - Variable in class org.geppetto.persistence.db.DBManagerTest
 
dbConnProperties - Variable in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
DBManager - Class in org.geppetto.persistence.db
 
DBManager() - Constructor for class org.geppetto.persistence.db.DBManager
 
dbManager - Variable in class org.geppetto.persistence.GeppettoDataManager
 
dbManager - Variable in class org.geppetto.persistence.util.DBTestData
 
DBManagerTest - Class in org.geppetto.persistence.db
 
DBManagerTest() - Constructor for class org.geppetto.persistence.db.DBManagerTest
 
DBTestData - Class in org.geppetto.persistence.util
 
DBTestData() - Constructor for class org.geppetto.persistence.util.DBTestData
 
DCM_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'DCM' literal value.
decreaseExperimentCounter(IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
DEFAULT_CHARSET - Static variable in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
DEFAULT_COLOR_EDEFAULT - Static variable in class org.geppetto.model.values.impl.VisualGroupElementImpl
The default value of the 'Default Color' attribute.
DefaultAuthService - Class in org.geppetto.core.auth
 
DefaultAuthService() - Constructor for class org.geppetto.core.auth.DefaultAuthService
 
defaultCase(EObject) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Returns the result of interpreting the object as an instance of 'EObject'.
defaultCase(EObject) - Method in class org.geppetto.model.types.util.TypesSwitch
Returns the result of interpreting the object as an instance of 'EObject'.
defaultCase(EObject) - Method in class org.geppetto.model.util.GeppettoSwitch
Returns the result of interpreting the object as an instance of 'EObject'.
defaultCase(EObject) - Method in class org.geppetto.model.values.util.ValuesSwitch
Returns the result of interpreting the object as an instance of 'EObject'.
defaultCase(EObject) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Returns the result of interpreting the object as an instance of 'EObject'.
defaultColor - Variable in class org.geppetto.model.values.impl.VisualGroupElementImpl
The cached value of the 'Default Color' attribute.
DefaultGeppettoDataManager - Class in org.geppetto.core.data
 
DefaultGeppettoDataManager() - Constructor for class org.geppetto.core.data.DefaultGeppettoDataManager
 
DefaultMessageSender - Class in org.geppetto.frontend.messaging
DefaultMessageSender handles transmission of messages to a client via WebSockets.
DefaultMessageSender() - Constructor for class org.geppetto.frontend.messaging.DefaultMessageSender
 
DefaultMessageSender.BinaryMessageSender - Class in org.geppetto.frontend.messaging
 
DefaultMessageSender.Preprocessor - Class in org.geppetto.frontend.messaging
 
DefaultMessageSender.TextMessageSender - Class in org.geppetto.frontend.messaging
 
DefaultMessageSenderFactory - Class in org.geppetto.frontend.messaging
 
DefaultMessageSenderFactory() - Constructor for class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
defaultValue - Variable in class org.geppetto.model.types.impl.ArgumentTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.ArrayTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.CompositeTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.ConnectionTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.DynamicsTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.ExpressionTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.HTMLTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.ImageTypeImpl
The cached value of the 'Default Value' reference.
defaultValue - Variable in class org.geppetto.model.types.impl.ParameterTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.PointerTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.PointTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.QuantityTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.StateVariableTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.TextTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.URLTypeImpl
The cached value of the 'Default Value' containment reference.
defaultValue - Variable in class org.geppetto.model.types.impl.VisualTypeImpl
The cached value of the 'Default Value' containment reference.
DefaultViewCustomiserFeature - Class in org.geppetto.model.neuroml.features
 
DefaultViewCustomiserFeature() - Constructor for class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
delete(File) - Static method in class org.geppetto.simulator.external.services.Utilities
 
deleteAllEntities(Class<T>) - Method in class org.geppetto.persistence.db.DBManager
Delete all entities of a given type.
deleteAllJobs(CiClient) - Static method in class org.geppetto.simulator.remote.services.NSGUtilities
 
deleteDirectory(File) - Static method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
deleteEntity(IDataEntity) - Method in class org.geppetto.persistence.db.DBManager
Delete the provided entity from DB.
deleteExperiment(IExperiment) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
deleteExperiment(IExperiment) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
deleteExperiment(String, IExperiment) - Method in interface org.geppetto.core.manager.IExperimentManager
Delete a specified experiment
deleteExperiment(String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
deleteExperiment(IExperiment) - Method in class org.geppetto.persistence.GeppettoDataManager
 
deleteExperiment(String, IExperiment) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
deleteFromS3(String) - Method in interface org.geppetto.core.data.IGeppettoS3Manager
 
deleteFromS3(String) - Method in class org.geppetto.core.s3.S3Manager
Delete the file given by the path from S3.
deleteGeppettoProject(long, IUser) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
deleteGeppettoProject(long, IUser) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
deleteGeppettoProject(int) - Method in class org.geppetto.frontend.dashboard.service.GeppettoProjectController
 
deleteGeppettoProject(long, IUser) - Method in class org.geppetto.persistence.GeppettoDataManager
 
deleteProject(String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IProjectManager
 
deleteProject(long, IUser) - Method in class org.geppetto.persistence.db.DBManager
Delete a project identified by id and user.
deleteProject(String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
deleteProjectTmpFolder(Scope, long) - Static method in class org.geppetto.core.beans.PathConfiguration
 
demoProjects(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
DENDRITES_COLOR - Static variable in class org.geppetto.model.neuroml.visualUtils.ModelInterpreterVisualConstants
 
dependenciesLibrary - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Dependencies Library' reference list.
dependentModels - Variable in class org.geppetto.core.model.AModelInterpreter
 
dependentModels - Variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
deresolve(URIHandler, EObject, EObject) - Method in class org.geppetto.core.model.EMapGeppettoSerializer
 
description - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
description - Variable in class org.geppetto.frontend.tests.TestModule
 
description - Variable in class org.geppetto.model.datasources.impl.QueryImpl
The cached value of the 'Description' attribute.
description - Variable in class org.geppetto.persistence.db.model.Experiment
 
DESCRIPTION_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.QueryImpl
The default value of the 'Description' attribute.
deserialize(JsonElement, Type, JsonDeserializationContext) - Method in class org.geppetto.core.utilities.LocalViewSerializer
 
deserialize(JsonElement, Type, JsonDeserializationContext) - Method in class org.geppetto.persistence.util.ViewSerializer
 
detachEntity(T) - Method in class org.geppetto.persistence.db.DBManager
 
details - Variable in class org.geppetto.persistence.db.model.Experiment
 
DIRECTIONAL_VALUE - Static variable in enum org.geppetto.model.values.Connectivity
The 'DIRECTIONAL' literal value.
directoryToExecuteFrom - Variable in class org.geppetto.core.simulator.AExternalProcessSimulator
 
dirToExecute - Static variable in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
dirToExecute - Static variable in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
dirToExecute - Static variable in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
dirToExecute - Static variable in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
dirToExecute - Static variable in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
discardMessagesIfQueueFull - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
If true and a queue is full then discard the oldest task to make room for the new task.
discardMessagesIfQueueFull - Variable in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
distal - Variable in class org.geppetto.model.values.impl.CylinderImpl
The cached value of the 'Distal' containment reference.
distance(Point3DWithDiam, Point3DWithDiam) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
doGET(String, String) - Static method in class org.geppetto.core.common.GeppettoHTTPClient
 
doGetAuthenticationInfo(AuthenticationToken) - Method in class org.geppetto.frontend.controllers.GeppettoRealm
 
doJSONPost(String, String) - Static method in class org.geppetto.core.common.GeppettoHTTPClient
 
DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Domain Model' class.
DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Domain Model' class.
DOMAIN_MODEL__DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Domain Model' attribute.
DOMAIN_MODEL__DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Domain Model' attribute feature.
DOMAIN_MODEL__FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Format' containment reference.
DOMAIN_MODEL__FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Format' containment reference feature.
DOMAIN_MODEL_EDEFAULT - Static variable in class org.geppetto.model.impl.DomainModelImpl
The default value of the 'Domain Model' attribute.
DOMAIN_MODEL_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Domain Model' class.
DOMAIN_MODEL_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Domain Model' class.
DomainModel - Interface in org.geppetto.model
A representation of the model object 'Domain Model'.
domainModel - Variable in class org.geppetto.model.impl.DomainModelImpl
The cached value of the 'Domain Model' attribute.
domainModel - Variable in class org.geppetto.model.types.impl.TypeImpl
The cached value of the 'Domain Model' reference.
domainModelEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
DomainModelImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Domain Model'.
DomainModelImpl() - Constructor for class org.geppetto.model.impl.DomainModelImpl
 
done(QueryResults) - Method in interface org.geppetto.core.datasources.IQueryListener
 
done - Static variable in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
done - Static variable in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
done - Static variable in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
done - Static variable in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
done - Static variable in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
doSetModelParameters(Map<String, String>) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
doSetWatchedVariables(List<String>, boolean) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
doSwitch(int, EObject) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Calls caseXXX for each class of the model until one returns a non null result; it yields that result.
doSwitch(int, EObject) - Method in class org.geppetto.model.types.util.TypesSwitch
Calls caseXXX for each class of the model until one returns a non null result; it yields that result.
doSwitch(int, EObject) - Method in class org.geppetto.model.util.GeppettoSwitch
Calls caseXXX for each class of the model until one returns a non null result; it yields that result.
doSwitch(int, EObject) - Method in class org.geppetto.model.values.util.ValuesSwitch
Calls caseXXX for each class of the model until one returns a non null result; it yields that result.
doSwitch(int, EObject) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Calls caseXXX for each class of the model until one returns a non null result; it yields that result.
downloadExperimentResults(int, int) - Method in class org.geppetto.frontend.dashboard.service.GeppettoProjectController
 
downloadModel(String, ModelFormat, IExperiment, IGeppettoProject) - Method in interface org.geppetto.core.manager.IDownloadManager
Writes the model enclosed in a given aspect for a specified format supported by a converter service to a string.
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in interface org.geppetto.core.model.IModelInterpreter
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.core.model.services.ColladaModelInterpreterService
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.core.model.services.ObjModelInterpreterService
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.core.TestModelInterpreter
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.core.TestModelInterpreter2
 
downloadModel(String, String, String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.model.nwb.NWBModelInterpreterService
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
downloadModel(String, ModelFormat, IExperiment, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
downloadModel(String, ModelFormat) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
downloadModel(Pointer, ModelFormat, IAspectConfiguration) - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
downloadModelFolderName - Static variable in class org.geppetto.core.beans.PathConfiguration
 
downloadProject(IGeppettoProject) - Method in interface org.geppetto.core.manager.IDownloadManager
Download Project
downloadProject(String, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
downloadProject(IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
downloadResults(String, ResultsFormat, IExperiment, IGeppettoProject) - Method in interface org.geppetto.core.manager.IDownloadManager
 
downloadResults(String, String, long, long, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
downloadResults(String, ResultsFormat, IExperiment, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
doYourOneTimeTeardown() - Static method in class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.model.neuroml.test.PerformanceTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulation.test.GeppettoManagerTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
doYourOneTimeTeardown() - Static method in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
dropboxService - Variable in class org.geppetto.simulation.manager.GeppettoManager
 
dropboxToken - Variable in class org.geppetto.core.data.model.local.LocalUser
 
dropboxToken - Variable in class org.geppetto.persistence.db.model.User
 
DropboxUploadService - Class in org.geppetto.core.services
Class for uploading files to a drop box account.
DropboxUploadService() - Constructor for class org.geppetto.core.services.DropboxUploadService
 
duration - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
Dynamics - Interface in org.geppetto.model.values
A representation of the model object 'Dynamics'.
dynamics - Variable in class org.geppetto.model.values.impl.DynamicsImpl
The cached value of the 'Dynamics' containment reference.
DYNAMICS - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Dynamics' class.
DYNAMICS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Dynamics' class.
DYNAMICS__DYNAMICS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Dynamics' containment reference.
DYNAMICS__DYNAMICS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Dynamics' containment reference feature.
DYNAMICS__INITIAL_CONDITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Initial Condition' containment reference.
DYNAMICS__INITIAL_CONDITION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Initial Condition' containment reference feature.
DYNAMICS__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
DYNAMICS_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Dynamics' class.
DYNAMICS_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Dynamics' class.
DYNAMICS_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Dynamics Type' class.
DYNAMICS_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Dynamics Type' class.
DYNAMICS_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
DYNAMICS_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
DYNAMICS_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
DYNAMICS_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
DYNAMICS_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
DYNAMICS_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
DYNAMICS_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
DYNAMICS_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
DYNAMICS_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
DYNAMICS_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
DYNAMICS_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
DYNAMICS_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
DYNAMICS_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
DYNAMICS_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
DYNAMICS_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Dynamics Type' class.
DYNAMICS_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Dynamics Type' class.
dynamicsEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
DynamicsImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Dynamics'.
DynamicsImpl() - Constructor for class org.geppetto.model.values.impl.DynamicsImpl
 
DynamicsType - Interface in org.geppetto.model.types
A representation of the model object 'Dynamics Type'.
dynamicsTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
DynamicsTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Dynamics Type'.
DynamicsTypeImpl() - Constructor for class org.geppetto.model.types.impl.DynamicsTypeImpl
 
DZI_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'DZI' literal value.

E

editingDomain - Variable in class org.geppetto.core.model.GeppettoModelAccess
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.DomainModelImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.ModelFormatImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.NodeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.TagImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.impl.VariableValueImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ColladaImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.CompositeImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.HTMLImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ImageImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.OBJImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.PointerImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.PointImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.QuantityImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.SphereImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.TextImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.UnitImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.URLImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.ValueImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
eGet(int, boolean, boolean) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
eINSTANCE - Static variable in interface org.geppetto.model.datasources.DatasourcesFactory
The singleton instance of the factory.
eINSTANCE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The singleton instance of the package.
eINSTANCE - Static variable in interface org.geppetto.model.GeppettoFactory
The singleton instance of the factory.
eINSTANCE - Static variable in interface org.geppetto.model.GeppettoPackage
The singleton instance of the package.
eINSTANCE - Static variable in interface org.geppetto.model.types.TypesFactory
The singleton instance of the factory.
eINSTANCE - Static variable in interface org.geppetto.model.types.TypesPackage
The singleton instance of the package.
eINSTANCE - Static variable in interface org.geppetto.model.values.ValuesFactory
The singleton instance of the factory.
eINSTANCE - Static variable in interface org.geppetto.model.values.ValuesPackage
The singleton instance of the package.
eINSTANCE - Static variable in interface org.geppetto.model.variables.VariablesFactory
The singleton instance of the factory.
eINSTANCE - Static variable in interface org.geppetto.model.variables.VariablesPackage
The singleton instance of the package.
eInverseAdd(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eInverseAdd(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.DomainModelImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.TagImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.impl.VariableValueImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.CompositeImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.PointerImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
eInverseRemove(InternalEObject, int, NotificationChain) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
eInvoke(int, <any>) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eInvoke(int, <any>) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eInvoke(int, <any>) - Method in class org.geppetto.model.impl.NodeImpl
 
eInvoke(int, <any>) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eInvoke(int, <any>) - Method in class org.geppetto.model.values.impl.PointerImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
eIsSet(int) - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.DomainModelImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.ModelFormatImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.NodeImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.TagImpl
 
eIsSet(int) - Method in class org.geppetto.model.impl.VariableValueImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ColladaImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.CompositeImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.HTMLImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ImageImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.OBJImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.PointerImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.PointImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.QuantityImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.SphereImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.TextImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.UnitImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.URLImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.ValueImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
eIsSet(int) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
eIsSet(int) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
eIsSet(int) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
elements - Variable in class org.geppetto.model.values.impl.ArrayValueImpl
The cached value of the 'Elements' containment reference list.
elements - Variable in class org.geppetto.model.values.impl.PointerImpl
The cached value of the 'Elements' containment reference list.
EMapGeppettoSerializer - Class in org.geppetto.core.model
 
EMapGeppettoSerializer(JacksonOptions) - Constructor for class org.geppetto.core.model.EMapGeppettoSerializer
 
EMPTY_STRING - Static variable in class org.geppetto.frontend.messages.TransportMessageFactory
 
eNAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The package name.
eNAME - Static variable in interface org.geppetto.model.GeppettoPackage
The package name.
eNAME - Static variable in interface org.geppetto.model.types.TypesPackage
The package name.
eNAME - Static variable in interface org.geppetto.model.values.ValuesPackage
The package name.
eNAME - Static variable in interface org.geppetto.model.variables.VariablesPackage
The package name.
endDate - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
endDate - Variable in class org.geppetto.persistence.db.model.Experiment
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in interface org.geppetto.core.simulation.ISimulatorCallbackListener
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
endOfSteps(IAspectConfiguration, Map<File, ResultsFormat>) - Method in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
eNS_PREFIX - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The package namespace name.
eNS_PREFIX - Static variable in interface org.geppetto.model.GeppettoPackage
The package namespace name.
eNS_PREFIX - Static variable in interface org.geppetto.model.types.TypesPackage
The package namespace name.
eNS_PREFIX - Static variable in interface org.geppetto.model.values.ValuesPackage
The package namespace name.
eNS_PREFIX - Static variable in interface org.geppetto.model.variables.VariablesPackage
The package namespace name.
eNS_URI - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The package namespace URI.
eNS_URI - Static variable in interface org.geppetto.model.GeppettoPackage
The package namespace URI.
eNS_URI - Static variable in interface org.geppetto.model.types.TypesPackage
The package namespace URI.
eNS_URI - Static variable in interface org.geppetto.model.values.ValuesPackage
The package namespace URI.
eNS_URI - Static variable in interface org.geppetto.model.variables.VariablesPackage
The package namespace URI.
eNS_URI_TEMPLATE - Static variable in interface org.geppetto.model.GeppettoPackage
The package namespace URI.
equals(Object) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
equals(Object) - Method in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
equals(Object) - Method in class org.geppetto.model.impl.ModelFormatImpl
 
equals(Pointer, Pointer) - Static method in class org.geppetto.model.util.PointerUtility
 
equals(PointerElement, PointerElement) - Static method in class org.geppetto.model.util.PointerUtility
 
equals(Object) - Method in class org.geppetto.persistence.db.model.Experiment
 
error - Variable in class org.geppetto.frontend.admin.AdminErrorObject
 
error - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
error(Exception, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
Error(GeppettoErrorCodes, String, String, long) - Constructor for class org.geppetto.frontend.controllers.ConnectionHandler.Error
 
error_code - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.Error
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
eSet(int, Object) - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.DomainModelImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.ModelFormatImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.NodeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.TagImpl
 
eSet(int, Object) - Method in class org.geppetto.model.impl.VariableValueImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ColladaImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.CompositeImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.HTMLImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ImageImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.OBJImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.PointerImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.PointImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.QuantityImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.SphereImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.TextImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.UnitImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.URLImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.ValueImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
eSet(int, Object) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
eSet(int, Object) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
eSet(int, Object) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.AQueryResultImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
eStaticClass() - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.DomainModelImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.ModelFormatImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.NodeImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.TagImpl
 
eStaticClass() - Method in class org.geppetto.model.impl.VariableValueImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.SimpleTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.TypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ColladaImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.CompositeImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.CylinderImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.FunctionImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.HTMLImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ImageImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.MetadataValueImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.OBJImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.PointerImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.PointImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.QuantityImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.SphereImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.TextImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.UnitImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.URLImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.ValueImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
eStaticClass() - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
eStaticClass() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
eStaticClass() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
eUnset(int) - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.DomainModelImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.ModelFormatImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.NodeImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.TagImpl
 
eUnset(int) - Method in class org.geppetto.model.impl.VariableValueImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.TypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ColladaImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.CompositeImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.HTMLImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ImageImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.OBJImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.PointerImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.PointImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.QuantityImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.SphereImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.TextImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.UnitImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.URLImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.ValueImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
eUnset(int) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
eUnset(int) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
eUnset(int) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
ExampleTypeTest - Class in org.geppetto.core
JUnit test for the example type.
ExampleTypeTest() - Constructor for class org.geppetto.core.ExampleTypeTest
 
exception - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.Error
 
exception - Variable in class org.geppetto.model.test.PointerUtilityTest
 
exception - Variable in class org.geppetto.simulation.test.GeppettoManagerTest
 
exception - Variable in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
execute(List<RunnableQuery>) - Method in interface org.geppetto.core.datasources.IQueryProvider
This is an asynchronous method that will initiate the execution of a query
existingExperiment - Static variable in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
experiment - Variable in class org.geppetto.core.conversion.AConversion
 
experiment - Variable in class org.geppetto.core.simulator.ASimulator
 
experiment - Variable in class org.geppetto.frontend.admin.AdminErrorObject
 
experiment - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
Experiment - Class in org.geppetto.persistence.db.model
 
Experiment(List<AspectConfiguration>, String, String, Date, Date, ExperimentStatus, List<SimulationResult>, Date, Date, IGeppettoProject, View) - Constructor for class org.geppetto.persistence.db.model.Experiment
 
experiment - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
experiment - Variable in class org.geppetto.simulation.manager.RuntimeExperiment
 
experiment - Variable in class org.geppetto.simulation.manager.SimulatorRunThread
 
EXPERIMENT_ID_EDEFAULT - Static variable in class org.geppetto.model.impl.ExperimentStateImpl
The default value of the 'Experiment Id' attribute.
EXPERIMENT_STATE - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Experiment State' class.
EXPERIMENT_STATE - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Experiment State' class.
EXPERIMENT_STATE__EXPERIMENT_ID - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Experiment Id' attribute.
EXPERIMENT_STATE__EXPERIMENT_ID - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Experiment Id' attribute feature.
EXPERIMENT_STATE__PROJECT_ID - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Project Id' attribute.
EXPERIMENT_STATE__PROJECT_ID - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Project Id' attribute feature.
EXPERIMENT_STATE__RECORDED_VARIABLES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Recorded Variables' containment reference list.
EXPERIMENT_STATE__RECORDED_VARIABLES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Recorded Variables' containment reference list feature.
EXPERIMENT_STATE__SET_PARAMETERS - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Set Parameters' containment reference list.
EXPERIMENT_STATE__SET_PARAMETERS - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Set Parameters' containment reference list feature.
EXPERIMENT_STATE_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Experiment State' class.
EXPERIMENT_STATE_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Experiment State' class.
experimentError(String, String, Exception, IExperiment) - Method in interface org.geppetto.core.simulation.IGeppettoManagerCallbackListener
 
experimentError(String, String, Exception, IExperiment) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
experimentError(String, String, Exception, IExperiment) - Method in interface org.geppetto.simulation.IExperimentListener
 
experimentError(String, String, Exception, IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
experimentId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
experimentId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
experimentId - Variable in class org.geppetto.model.impl.ExperimentStateImpl
The cached value of the 'Experiment Id' attribute.
experimentLastRun - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
ExperimentRunChecker - Class in org.geppetto.simulation.manager
 
ExperimentRunChecker() - Constructor for class org.geppetto.simulation.manager.ExperimentRunChecker
 
experimentRunDone(ExperimentRunThread, IExperiment, RuntimeProject) - Method in interface org.geppetto.simulation.IExperimentListener
 
experimentRunDone(ExperimentRunThread, IExperiment, RuntimeProject) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
ExperimentRunManager - Class in org.geppetto.simulation.manager
The ExperimentRunManager is a singleton responsible for managing a queue per each user to run the experiments.
ExperimentRunManager() - Constructor for class org.geppetto.simulation.manager.ExperimentRunManager
 
ExperimentRunThread - Class in org.geppetto.simulation.manager
The ExperimentRun is created when an experiment can be executed, during the init phase all the needed services are created.
ExperimentRunThread(IExperiment, RuntimeProject, IExperimentListener) - Constructor for class org.geppetto.simulation.manager.ExperimentRunThread
 
experimentRuntime - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
experiments - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
experiments - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
experiments - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.BatchExperiment
 
experiments - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
experimentsCounter - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
experimentState - Variable in class org.geppetto.core.simulator.ASimulator
 
ExperimentState - Interface in org.geppetto.model
A representation of the model object 'Experiment State'.
experimentState - Variable in class org.geppetto.simulation.manager.RuntimeExperiment
 
experimentStateEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
ExperimentStateImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Experiment State'.
ExperimentStateImpl() - Constructor for class org.geppetto.model.impl.ExperimentStateImpl
 
ExperimentStatus - Enum in org.geppetto.core.data.model
 
ExperimentStatus(String) - Constructor for enum org.geppetto.core.data.model.ExperimentStatus
 
Expression - Interface in org.geppetto.model.values
A representation of the model object 'Expression'.
expression - Variable in class org.geppetto.model.values.impl.ExpressionImpl
The cached value of the 'Expression' attribute.
expression - Variable in class org.geppetto.model.values.impl.FunctionImpl
The cached value of the 'Expression' containment reference.
EXPRESSION - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Expression' class.
EXPRESSION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Expression' class.
EXPRESSION__EXPRESSION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Expression' attribute.
EXPRESSION__EXPRESSION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Expression' attribute feature.
EXPRESSION__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
EXPRESSION_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ExpressionImpl
The default value of the 'Expression' attribute.
EXPRESSION_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Expression' class.
EXPRESSION_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Expression' class.
EXPRESSION_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Expression Type' class.
EXPRESSION_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Expression Type' class.
EXPRESSION_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
EXPRESSION_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
EXPRESSION_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
EXPRESSION_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
EXPRESSION_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
EXPRESSION_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
EXPRESSION_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
EXPRESSION_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
EXPRESSION_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
EXPRESSION_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
EXPRESSION_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
EXPRESSION_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
EXPRESSION_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
EXPRESSION_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
EXPRESSION_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Expression Type' class.
EXPRESSION_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Expression Type' class.
expressionEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ExpressionImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Expression'.
ExpressionImpl() - Constructor for class org.geppetto.model.values.impl.ExpressionImpl
 
ExpressionType - Interface in org.geppetto.model.types
A representation of the model object 'Expression Type'.
expressionTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ExpressionTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Expression Type'.
ExpressionTypeImpl() - Constructor for class org.geppetto.model.types.impl.ExpressionTypeImpl
 
extendJsonObject(JsonObject, ViewProcessor.ConflictStrategy, JsonObject...) - Static method in class org.geppetto.simulation.manager.ViewProcessor
 
extendJsonObject(JsonObject, JsonObject, ViewProcessor.ConflictStrategy) - Static method in class org.geppetto.simulation.manager.ViewProcessor
 
extendsType(Type) - Method in class org.geppetto.model.types.impl.TypeImpl
 
extendsType(Type) - Method in interface org.geppetto.model.types.Type
 
extension(File) - Static method in class org.geppetto.simulator.external.services.Utilities
 
EXTERNAL_DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'External Domain Model' class.
EXTERNAL_DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'External Domain Model' class.
EXTERNAL_DOMAIN_MODEL__DOMAIN_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Domain Model' attribute.
EXTERNAL_DOMAIN_MODEL__FILE_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'File Format' attribute.
EXTERNAL_DOMAIN_MODEL__FILE_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'File Format' attribute feature.
EXTERNAL_DOMAIN_MODEL__FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Format' containment reference.
EXTERNAL_DOMAIN_MODEL_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'External Domain Model' class.
EXTERNAL_DOMAIN_MODEL_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'External Domain Model' class.
ExternalDomainModel - Interface in org.geppetto.model
A representation of the model object 'External Domain Model'.
externalDomainModelEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
ExternalDomainModelImpl - Class in org.geppetto.model.impl
An implementation of the model object 'External Domain Model'.
ExternalDomainModelImpl() - Constructor for class org.geppetto.model.impl.ExternalDomainModelImpl
 
ExternalProcess - Class in org.geppetto.core.externalprocesses
Threaded class used to execute an external process
ExternalProcess(String[], String, String, IExternalSimulatorCallbackListener, String) - Constructor for class org.geppetto.core.externalprocesses.ExternalProcess
 
externalProcesses - Variable in class org.geppetto.core.simulator.AExternalProcessSimulator
 
externalProcessFailed(String, Exception) - Method in interface org.geppetto.core.simulation.ISimulatorCallbackListener
 
externalProcessFailed(String, Exception) - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
externalProcessFailed(String, Exception) - Method in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
externalProcessFailed(String, Exception) - Method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
externalProcessFailed(String, Exception) - Method in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
externalProcessFailed(String, Exception) - Method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
externalProcessFailed(String, Exception) - Method in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
ExternalProcessWatcher - Class in org.geppetto.core.externalprocesses
Threaded class to print out log statements with Neuron Process logs.
ExternalProcessWatcher(InputStream, String) - Constructor for class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
ExternalSimulatorConfig - Class in org.geppetto.core.simulator
 
ExternalSimulatorConfig() - Constructor for class org.geppetto.core.simulator.ExternalSimulatorConfig
 
extractColor(Variable) - Method in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
extractConnection(Component, ArrayType, Variable, ArrayType, Variable) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateContinuousProjectionTypes
 
extractConnection(Component, ArrayType, Variable, ArrayType, Variable) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateElectricalProjectionTypes
 
extractConnection(Component, ArrayType, Variable, ArrayType, Variable) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateProjectionTypes
 
extractConnection(BaseConnectionOldFormat, ArrayType, Variable, ArrayType, Variable) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateProjectionTypes
 
extractData(Variable) - Method in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
extractDescription(Type, StringBuilder) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
extractInfoFromComponent(Component) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
extractInfoFromComponent(Component, String) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
extractLEMSPath(Component, Pointer) - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
extractPaths(Type, GeppettoLibrary) - Method in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
extractPlottables(CompositeType, InfoNode) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
extractResults(File, File) - Static method in class org.geppetto.simulator.remote.services.NSGUtilities
 
extractTypes(URL, String, GeppettoLibrary, GeppettoModelAccess, ILEMSDocument, NeuroMLDocument, NetworkHelper) - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
ExtractVisualType - Class in org.geppetto.model.neuroml.visualUtils
Helper class to populate visualization tree for neuroml models
ExtractVisualType(Cell, GeppettoModelAccess) - Constructor for class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 

F

features - Variable in class org.geppetto.core.services.AService
 
features - Variable in class org.geppetto.frontend.tests.TestModel
 
fetchVariable(String) - Method in interface org.geppetto.core.datasources.IDataSourceService
 
fetchVariable(String, String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IDataSourceManager
 
fetchVariable(String, Long, String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
fetchVariable(String, String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
fetchVariable(String, String) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
fetchVariableQuery - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Fetch Variable Query' containment reference.
FILE_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'File Format' enum.
FILE_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'File Format' enum.
FILE_FORMAT_EDEFAULT - Static variable in class org.geppetto.model.impl.ExternalDomainModelImpl
The default value of the 'File Format' attribute.
FileFormat - Enum in org.geppetto.model
A representation of the literals of the enumeration 'File Format', and utility methods for working with them.
FileFormat(int, String, String) - Constructor for enum org.geppetto.model.FileFormat
Only this class can construct instances.
fileFormat - Variable in class org.geppetto.model.impl.ExternalDomainModelImpl
The cached value of the 'File Format' attribute.
fileFormatEEnum - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
fileOpened - Variable in class org.geppetto.model.nwb.ReadNWBFile
 
filePath - Variable in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
filePath - Variable in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
filePath - Variable in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
filePath - Variable in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
filePath - Variable in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
fileToExecute - Static variable in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
fileToExecute - Static variable in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
fileToExecute - Static variable in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
fileToExecute - Static variable in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
fileToExecute - Static variable in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
FINAL_VALUE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The default value of the 'Final Value' attribute.
finalValue - Variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The cached value of the 'Final Value' attribute.
findEntityById(Class<T>, long) - Method in class org.geppetto.persistence.db.DBManager
Retrieves an entity of a given type and id.
findInstanceVariable(String, GeppettoModel) - Static method in class org.geppetto.model.util.PointerUtility
 
findLibrary(GeppettoModel, String) - Static method in class org.geppetto.model.util.PointerUtility
 
FindLocalProjectsVisitor<T extends IGeppettoProject> - Class in org.geppetto.core.data
 
FindLocalProjectsVisitor(Map<Long, T>, Class<T>) - Constructor for class org.geppetto.core.data.FindLocalProjectsVisitor
 
findType(String, GeppettoLibrary) - Static method in class org.geppetto.model.util.PointerUtility
 
findType(String, Variable) - Static method in class org.geppetto.model.util.PointerUtility
 
findUserByLogin(String) - Method in class org.geppetto.persistence.db.DBManager
Fetches a user from the database
findVariable(String, CompositeType) - Static method in class org.geppetto.model.util.PointerUtility
 
findVariableValue(String, ExperimentState) - Method in class org.geppetto.core.simulator.RecordingReader
 
finishRequest() - Static method in class org.geppetto.persistence.db.DBManager
 
fname - Static variable in class org.geppetto.core.TestHDFBindings
 
forbiddenCharacters - Static variable in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
forceResolve - Variable in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
format - Variable in class org.geppetto.core.data.model.local.LocalSimulationResult
 
format - Variable in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
The cached value of the 'Format' attribute.
format - Variable in class org.geppetto.model.impl.DomainModelImpl
The cached value of the 'Format' containment reference.
format - Variable in class org.geppetto.model.values.impl.ImageImpl
The cached value of the 'Format' attribute.
format - Variable in class org.geppetto.persistence.db.model.SimulationResult
 
FORMAT_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
The default value of the 'Format' attribute.
FORMAT_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ImageImpl
The default value of the 'Format' attribute.
formatDescription(String) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
fos - Variable in class org.geppetto.core.utilities.Zipper
 
fromExportValue(String) - Static method in enum org.geppetto.model.neuroml.utils.ModelFormatMapping
 
fromJSON(<any>, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
fullPathToZipToCreate - Variable in class org.geppetto.core.utilities.Zipper
 
Function - Interface in org.geppetto.model.values
A representation of the model object 'Function'.
FUNCTION - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Function' class.
FUNCTION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Function' class.
FUNCTION__ARGUMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Arguments' containment reference list.
FUNCTION__ARGUMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Arguments' containment reference list feature.
FUNCTION__EXPRESSION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Expression' containment reference.
FUNCTION__EXPRESSION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Expression' containment reference feature.
FUNCTION__FUNCTION_PLOT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Function Plot' containment reference.
FUNCTION__FUNCTION_PLOT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Function Plot' containment reference feature.
FUNCTION__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
FUNCTION_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Function' class.
FUNCTION_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Function' class.
FUNCTION_PLOT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Function Plot' class.
FUNCTION_PLOT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Function Plot' class.
FUNCTION_PLOT__FINAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Final Value' attribute.
FUNCTION_PLOT__FINAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Final Value' attribute feature.
FUNCTION_PLOT__INITIAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Initial Value' attribute.
FUNCTION_PLOT__INITIAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Initial Value' attribute feature.
FUNCTION_PLOT__STEP_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Step Value' attribute.
FUNCTION_PLOT__STEP_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Step Value' attribute feature.
FUNCTION_PLOT__TITLE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Title' attribute.
FUNCTION_PLOT__TITLE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Title' attribute feature.
FUNCTION_PLOT__XAXIS_LABEL - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'XAxis Label' attribute.
FUNCTION_PLOT__XAXIS_LABEL - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'XAxis Label' attribute feature.
FUNCTION_PLOT__YAXIS_LABEL - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'YAxis Label' attribute.
FUNCTION_PLOT__YAXIS_LABEL - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'YAxis Label' attribute feature.
FUNCTION_PLOT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Function Plot' class.
FUNCTION_PLOT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Function Plot' class.
functionEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
FunctionImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Function'.
FunctionImpl() - Constructor for class org.geppetto.model.values.impl.FunctionImpl
 
FunctionPlot - Interface in org.geppetto.model.values
A representation of the model object 'Function Plot'.
functionPlot - Variable in class org.geppetto.model.values.impl.FunctionImpl
The cached value of the 'Function Plot' containment reference.
functionPlotEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
FunctionPlotImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Function Plot'.
FunctionPlotImpl() - Constructor for class org.geppetto.model.values.impl.FunctionPlotImpl
 

G

gatherDefaultView - Variable in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
geppetto(HttpServletRequest, Model) - Method in class org.geppetto.frontend.controllers.Application
 
GEPPETTO_LIBRARY - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Library' class.
GEPPETTO_LIBRARY - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Library' class.
GEPPETTO_LIBRARY___GET_PATH - Static variable in interface org.geppetto.model.GeppettoPackage
The operation id for the 'Get Path' operation.
GEPPETTO_LIBRARY___GET_TYPE_BY_ID - Static variable in interface org.geppetto.model.GeppettoPackage
The operation id for the 'Get Type By Id' operation.
GEPPETTO_LIBRARY___GET_TYPE_BY_ID - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Get Type By Id' operation.
GEPPETTO_LIBRARY__ID - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Id' attribute.
GEPPETTO_LIBRARY__NAME - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Name' attribute.
GEPPETTO_LIBRARY__SHARED_TYPES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Shared Types' reference list.
GEPPETTO_LIBRARY__SHARED_TYPES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Shared Types' reference list feature.
GEPPETTO_LIBRARY__SYNCHED - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Synched' attribute.
GEPPETTO_LIBRARY__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Tags' reference list.
GEPPETTO_LIBRARY__TYPES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Types' containment reference list.
GEPPETTO_LIBRARY__TYPES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Types' containment reference list feature.
GEPPETTO_LIBRARY_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Library' class.
GEPPETTO_LIBRARY_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Library' class.
GEPPETTO_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Model' class.
GEPPETTO_MODEL - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Model' class.
GEPPETTO_MODEL__DATA_SOURCES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Data Sources' containment reference list.
GEPPETTO_MODEL__DATA_SOURCES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Data Sources' containment reference list feature.
GEPPETTO_MODEL__ID - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Id' attribute.
GEPPETTO_MODEL__ID - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Id' attribute feature.
GEPPETTO_MODEL__LIBRARIES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Libraries' containment reference list.
GEPPETTO_MODEL__LIBRARIES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Libraries' containment reference list feature.
GEPPETTO_MODEL__NAME - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Name' attribute.
GEPPETTO_MODEL__NAME - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Name' attribute feature.
GEPPETTO_MODEL__QUERIES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Queries' containment reference list.
GEPPETTO_MODEL__QUERIES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Queries' containment reference list feature.
GEPPETTO_MODEL__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Tags' containment reference list.
GEPPETTO_MODEL__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Tags' containment reference list feature.
GEPPETTO_MODEL__VARIABLES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Variables' containment reference list.
GEPPETTO_MODEL__VARIABLES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Variables' containment reference list feature.
GEPPETTO_MODEL_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Model' class.
GEPPETTO_MODEL_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Model' class.
GeppettoAccessException - Exception in org.geppetto.core.common
 
GeppettoAccessException(Throwable) - Constructor for exception org.geppetto.core.common.GeppettoAccessException
 
GeppettoAccessException(String) - Constructor for exception org.geppetto.core.common.GeppettoAccessException
 
GeppettoAccessException(String, Throwable) - Constructor for exception org.geppetto.core.common.GeppettoAccessException
 
GeppettoAdapterFactory - Class in org.geppetto.model.util
The Adapter Factory for the model.
GeppettoAdapterFactory() - Constructor for class org.geppetto.model.util.GeppettoAdapterFactory
Creates an instance of the adapter factory.
GeppettoAuthentication - Class in org.geppetto.persistence.auth
 
GeppettoAuthentication() - Constructor for class org.geppetto.persistence.auth.GeppettoAuthentication
 
geppettoCellTypesMap - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
GeppettoCommonUtils - Class in org.geppetto.core.common
 
GeppettoCommonUtils() - Constructor for class org.geppetto.core.common.GeppettoCommonUtils
 
GeppettoCustomTypeSerializer() - Constructor for class org.geppetto.core.model.GeppettoSerializer.GeppettoCustomTypeSerializer
 
GeppettoDataManager - Class in org.geppetto.persistence
 
GeppettoDataManager() - Constructor for class org.geppetto.persistence.GeppettoDataManager
 
GeppettoDataSourceException - Exception in org.geppetto.core.datasources
 
GeppettoDataSourceException(String, Throwable) - Constructor for exception org.geppetto.core.datasources.GeppettoDataSourceException
 
GeppettoDataSourceException(String) - Constructor for exception org.geppetto.core.datasources.GeppettoDataSourceException
 
GeppettoDataSourceException(Throwable) - Constructor for exception org.geppetto.core.datasources.GeppettoDataSourceException
 
GeppettoErrorCodes - Enum in org.geppetto.core.common
 
GeppettoErrorCodes() - Constructor for enum org.geppetto.core.common.GeppettoErrorCodes
 
GeppettoExecutionException - Exception in org.geppetto.core.common
 
GeppettoExecutionException(Throwable) - Constructor for exception org.geppetto.core.common.GeppettoExecutionException
 
GeppettoExecutionException(String) - Constructor for exception org.geppetto.core.common.GeppettoExecutionException
 
GeppettoExecutionException(String, Throwable) - Constructor for exception org.geppetto.core.common.GeppettoExecutionException
 
geppettoExtension(HttpServletRequest, Model) - Method in class org.geppetto.frontend.controllers.Application
 
GeppettoFactory - Interface in org.geppetto.model
The Factory for the model.
geppettoFactory - Static variable in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
geppettoFactory - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
GeppettoFactoryImpl - Class in org.geppetto.model.impl
An implementation of the model Factory.
GeppettoFactoryImpl() - Constructor for class org.geppetto.model.impl.GeppettoFactoryImpl
Creates an instance of the factory.
GeppettoFeature - Enum in org.geppetto.core.services
Enumeration defining all the existing features in Geppetto.
GeppettoFeature() - Constructor for enum org.geppetto.core.services.GeppettoFeature
 
GeppettoHTTPClient - Class in org.geppetto.core.common
 
GeppettoHTTPClient() - Constructor for class org.geppetto.core.common.GeppettoHTTPClient
 
GeppettoHTTPClientTest - Class in org.geppetto.core
 
GeppettoHTTPClientTest() - Constructor for class org.geppetto.core.GeppettoHTTPClientTest
 
GeppettoInitializationException - Exception in org.geppetto.core.common
 
GeppettoInitializationException(Throwable) - Constructor for exception org.geppetto.core.common.GeppettoInitializationException
 
GeppettoInitializationException(String) - Constructor for exception org.geppetto.core.common.GeppettoInitializationException
 
GeppettoInitializationException(String, Throwable) - Constructor for exception org.geppetto.core.common.GeppettoInitializationException
 
GeppettoLibrary - Interface in org.geppetto.model
A representation of the model object 'Library'.
geppettoLibraryEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
GeppettoLibraryImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Library'.
GeppettoLibraryImpl() - Constructor for class org.geppetto.model.impl.GeppettoLibraryImpl
 
geppettoManager - Variable in class org.geppetto.frontend.admin.AdminServlet
 
geppettoManager - Variable in class org.geppetto.frontend.controllers.Application
 
geppettoManager - Variable in class org.geppetto.frontend.controllers.ConnectionHandler
 
geppettoManager - Variable in class org.geppetto.frontend.controllers.Login
 
geppettoManager - Variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
geppettoManager - Variable in class org.geppetto.frontend.dashboard.service.GeppettoProjectController
 
geppettoManager - Variable in class org.geppetto.frontend.dashboard.service.GeppettoProjectsController
 
geppettoManager - Variable in class org.geppetto.frontend.dashboard.service.UserGeppettoProjectsResource
 
geppettoManager - Variable in class org.geppetto.frontend.dashboard.service.UserResource
 
geppettoManager - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
GeppettoManager - Class in org.geppetto.simulation.manager
GeppettoManager is the implementation of IGeppettoManager which represents the Java API entry point for Geppetto.
GeppettoManager() - Constructor for class org.geppetto.simulation.manager.GeppettoManager
 
GeppettoManager(IGeppettoManager) - Constructor for class org.geppetto.simulation.manager.GeppettoManager
 
GeppettoManager(Scope) - Constructor for class org.geppetto.simulation.manager.GeppettoManager
 
geppettoManager - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
geppettoManagerCallbackListener - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
geppettoManagerCallbackListener - Variable in class org.geppetto.simulation.manager.GeppettoManager
 
GeppettoManagerTest - Class in org.geppetto.simulation.test
This is an integration test which checks the workkflows of the GeppettoManager.
GeppettoManagerTest() - Constructor for class org.geppetto.simulation.test.GeppettoManagerTest
 
geppettoModel - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
geppettoModel - Variable in class org.geppetto.core.model.GeppettoModelAccess
 
GeppettoModel - Interface in org.geppetto.model
A representation of the model object 'Model'.
geppettoModel - Static variable in class org.geppetto.model.test.PointerUtilityTest
 
geppettoModel - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
geppettoModel - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
GeppettoModelAccess - Class in org.geppetto.core.model
 
GeppettoModelAccess(GeppettoModel) - Constructor for class org.geppetto.core.model.GeppettoModelAccess
 
geppettoModelAccess - Variable in class org.geppetto.core.recordings.ConvertDATToRecording
 
geppettoModelAccess - Variable in class org.geppetto.core.simulator.ASimulator
 
geppettoModelAccess - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
geppettoModelAccess - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
geppettoModelAccess - Variable in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
GeppettoModelAPIParameters() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
geppettoModelEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
GeppettoModelException - Exception in org.geppetto.model.util
 
GeppettoModelException(String, Throwable) - Constructor for exception org.geppetto.model.util.GeppettoModelException
 
GeppettoModelException(String) - Constructor for exception org.geppetto.model.util.GeppettoModelException
 
GeppettoModelException(Throwable) - Constructor for exception org.geppetto.model.util.GeppettoModelException
 
GeppettoModelImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Model'.
GeppettoModelImpl() - Constructor for class org.geppetto.model.impl.GeppettoModelImpl
 
GeppettoModelReader - Class in org.geppetto.core.model
 
GeppettoModelReader() - Constructor for class org.geppetto.core.model.GeppettoModelReader
 
GeppettoModelReaderTest - Class in org.geppetto.core
 
GeppettoModelReaderTest() - Constructor for class org.geppetto.core.GeppettoModelReaderTest
 
GeppettoModelTraversal - Class in org.geppetto.model.util
 
GeppettoModelTraversal() - Constructor for class org.geppetto.model.util.GeppettoModelTraversal
 
GeppettoModelTypesVisitor - Class in org.geppetto.simulation.visitor
 
GeppettoModelTypesVisitor(Path, RuntimeProject, Zipper, Scope) - Constructor for class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
GeppettoModelVisitor - Class in org.geppetto.simulation.visitor
 
GeppettoModelVisitor(RuntimeProject, Zipper) - Constructor for class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
GeppettoObjectMapper - Class in org.geppetto.frontend.controllers
 
GeppettoObjectMapper() - Constructor for class org.geppetto.frontend.controllers.GeppettoObjectMapper
 
GeppettoPackage - Interface in org.geppetto.model
The Package for the model.
GeppettoPackage.Literals - Interface in org.geppetto.model
Defines literals for the meta objects that represent each class, each feature of each class, each operation of each class, each enum, and each data type
GeppettoPackageImpl - Class in org.geppetto.model.impl
An implementation of the model Package.
GeppettoPackageImpl() - Constructor for class org.geppetto.model.impl.GeppettoPackageImpl
Creates an instance of the model Package, registered with EPackage.Registry by the package package URI value.
GeppettoPrinterSwitch - Class in org.geppetto.model.util
 
GeppettoPrinterSwitch() - Constructor for class org.geppetto.model.util.GeppettoPrinterSwitch
 
GeppettoPrinterSwitch.GGeppettoSwitch - Class in org.geppetto.model.util
 
GeppettoPrinterSwitch.GTypesSwitch - Class in org.geppetto.model.util
 
GeppettoPrinterSwitch.GVariablesSwitch - Class in org.geppetto.model.util
 
geppettoProject - Variable in class org.geppetto.frontend.controllers.ConnectionHandler
 
GeppettoProject - Class in org.geppetto.persistence.db.model
 
GeppettoProject(String, PersistedData) - Constructor for class org.geppetto.persistence.db.model.GeppettoProject
 
GeppettoProject() - Constructor for class org.geppetto.persistence.db.model.GeppettoProject
 
geppettoProject - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
geppettoProject - Static variable in class org.geppetto.simulation.test.GeppettoManagerTest
 
geppettoProject - Static variable in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
geppettoProject - Static variable in class org.geppetto.simulation.test.TestZippingProject
 
GeppettoProjectController - Class in org.geppetto.frontend.dashboard.service
 
GeppettoProjectController() - Constructor for class org.geppetto.frontend.dashboard.service.GeppettoProjectController
 
geppettoProjects - Variable in class org.geppetto.core.data.model.local.LocalUser
 
geppettoProjects - Variable in class org.geppetto.persistence.db.model.User
 
GeppettoProjectsController - Class in org.geppetto.frontend.dashboard.service
 
GeppettoProjectsController() - Constructor for class org.geppetto.frontend.dashboard.service.GeppettoProjectsController
 
GeppettoProjectZipper - Class in org.geppetto.simulation.utilities
Helper class for zipping a geppetto project.
GeppettoProjectZipper() - Constructor for class org.geppetto.simulation.utilities.GeppettoProjectZipper
 
GeppettoRealm - Class in org.geppetto.frontend.controllers
 
GeppettoRealm() - Constructor for class org.geppetto.frontend.controllers.GeppettoRealm
 
GeppettoRecordingCreator - Class in org.geppetto.core.recordings
Creates HDF5 Recordings file.
GeppettoRecordingCreator(String) - Constructor for class org.geppetto.core.recordings.GeppettoRecordingCreator
 
GeppettoResourceFactoryImpl - Class in org.geppetto.model.util
The Resource Factory associated with the package.
GeppettoResourceFactoryImpl() - Constructor for class org.geppetto.model.util.GeppettoResourceFactoryImpl
Creates an instance of the resource factory.
GeppettoResourceImpl - Class in org.geppetto.model.util
The Resource associated with the package.
GeppettoResourceImpl(URI) - Constructor for class org.geppetto.model.util.GeppettoResourceImpl
Creates an instance of the resource.
GeppettoSerializer - Class in org.geppetto.core.model
 
GeppettoSerializer() - Constructor for class org.geppetto.core.model.GeppettoSerializer
 
GeppettoSerializer.GeppettoCustomTypeSerializer - Class in org.geppetto.core.model
 
GeppettoSerializerTest - Class in org.geppetto.core
 
GeppettoSerializerTest() - Constructor for class org.geppetto.core.GeppettoSerializerTest
 
GeppettoServlet - Class in org.geppetto.frontend.controllers
 
GeppettoServlet() - Constructor for class org.geppetto.frontend.controllers.GeppettoServlet
 
GeppettoSwitch<T> - Class in org.geppetto.model.util
The Switch for the model's inheritance hierarchy.
GeppettoSwitch() - Constructor for class org.geppetto.model.util.GeppettoSwitch
Creates an instance of the switch.
geppettoTmp - Static variable in class org.geppetto.core.beans.PathConfiguration
 
GeppettoTransportMessage - Class in org.geppetto.frontend.messages
 
GeppettoTransportMessage() - Constructor for class org.geppetto.frontend.messages.GeppettoTransportMessage
 
GeppettoVisitingException - Exception in org.geppetto.model.util
 
GeppettoVisitingException(String, Throwable) - Constructor for exception org.geppetto.model.util.GeppettoVisitingException
 
GeppettoVisitingException(String) - Constructor for exception org.geppetto.model.util.GeppettoVisitingException
 
GeppettoVisitingException(Throwable) - Constructor for exception org.geppetto.model.util.GeppettoVisitingException
 
get(String) - Static method in enum org.geppetto.model.datasources.BooleanOperator
Returns the 'Boolean Operator' literal with the specified literal value.
get(int) - Static method in enum org.geppetto.model.datasources.BooleanOperator
Returns the 'Boolean Operator' literal with the specified integer value.
get(String) - Static method in enum org.geppetto.model.FileFormat
Returns the 'File Format' literal with the specified literal value.
get(int) - Static method in enum org.geppetto.model.FileFormat
Returns the 'File Format' literal with the specified integer value.
get() - Method in enum org.geppetto.model.neuroml.utils.Resources
 
get() - Method in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
get(String) - Static method in enum org.geppetto.model.values.Connectivity
Returns the 'Connectivity' literal with the specified literal value.
get(int) - Static method in enum org.geppetto.model.values.Connectivity
Returns the 'Connectivity' literal with the specified integer value.
get(String) - Static method in enum org.geppetto.model.values.ImageFormat
Returns the 'Image Format' literal with the specified literal value.
get(int) - Static method in enum org.geppetto.model.values.ImageFormat
Returns the 'Image Format' literal with the specified integer value.
getA() - Method in interface org.geppetto.model.values.Connection
Returns the value of the 'A' containment reference.
getA() - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
getAccess() - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
getActiveExperiment() - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getActiveExperimentId() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
getActiveExperimentId() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getActiveExperimentId() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getAllEntities(Class<T>) - Method in class org.geppetto.persistence.db.DBManager
Retrieve all entities of a given type.
getAllFiles(File, List<URL>) - Method in class org.geppetto.core.utilities.Zipper
 
getAllGeppettoProjects() - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getAllGeppettoProjects() - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getAllGeppettoProjects() - Method in class org.geppetto.frontend.dashboard.service.GeppettoProjectsController
 
getAllGeppettoProjects() - Method in class org.geppetto.persistence.GeppettoDataManager
 
getAllGeppettoProjectsCompact() - Method in class org.geppetto.frontend.dashboard.service.GeppettoProjectsController
 
getAllGeppettoProjectsWithReference(String) - Method in class org.geppetto.frontend.dashboard.service.GeppettoProjectsController
 
getAllTypesOf(Variable) - Static method in class org.geppetto.model.util.ModelUtility
 
getAllUsers() - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getAllUsers() - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getAllUsers() - Method in class org.geppetto.persistence.GeppettoDataManager
 
getAndIncrementCurrentIndex() - Method in class org.geppetto.core.simulator.RecordingReader
 
getAnonymousTypes() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
getAnonymousTypes() - Method in interface org.geppetto.model.variables.Variable
Returns the value of the 'Anonymous Types' containment reference list.
getApplicationContext(String) - Static method in class org.geppetto.core.services.registry.ApplicationListenerBean
 
getAQueryResult() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'AQuery Result'.
getAQueryResult() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getArgument() - Method in interface org.geppetto.model.values.Argument
Returns the value of the 'Argument' attribute.
getArgument() - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
getArgument() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArgument() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Argument'.
getArgument_Argument() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArgument_Argument() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Argument'.
getArguments() - Method in interface org.geppetto.model.values.Function
Returns the value of the 'Arguments' containment reference list.
getArguments() - Method in class org.geppetto.model.values.impl.FunctionImpl
 
getArgumentType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getArgumentType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Argument Type'.
getArgumentType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getArgumentType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getArrayElement() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArrayElement() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Array Element'.
getArrayElement_Index() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArrayElement_Index() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Index'.
getArrayElement_InitialValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArrayElement_InitialValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Initial Value'.
getArrayElement_Position() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArrayElement_Position() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Position'.
getArrayType() - Method in interface org.geppetto.model.types.ArrayType
Returns the value of the 'Array Type' reference.
getArrayType() - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
getArrayType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getArrayType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Array Type'.
getArrayType_ArrayType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getArrayType_ArrayType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the reference 'Array Type'.
getArrayType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getArrayType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getArrayType_Size() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getArrayType_Size() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the attribute 'Size'.
getArrayValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArrayValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Array Value'.
getArrayValue_Elements() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getArrayValue_Elements() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference list 'Elements'.
getAsMap(String) - Static method in class org.geppetto.core.common.JSONUtility
 
getAspectConfiguration(Pointer) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
getAspectConfigurations() - Method in interface org.geppetto.core.data.model.IExperiment
 
getAspectConfigurations() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getAspectConfigurations() - Method in class org.geppetto.persistence.db.model.Experiment
 
getAttribute(H5File, String, String) - Static method in class org.geppetto.model.nwb.ReadNWBFile
 
getAuthorizationURL() - Method in class org.geppetto.core.services.DropboxUploadService
 
getAvailableQueries(Variable) - Method in interface org.geppetto.core.datasources.IQueryProvider
 
getB() - Method in interface org.geppetto.model.values.Connection
Returns the value of the 'B' containment reference.
getB() - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
getBaseURL() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
getBaseURL() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getBaseURL() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getBooleanOperator() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for enum 'Boolean Operator'.
getBooleanOperator() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getBooleanOperator() - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
getBooleanOperator() - Method in interface org.geppetto.model.datasources.RunnableQuery
Returns the value of the 'Boolean Operator' attribute.
getBottomRadius() - Method in interface org.geppetto.model.values.Cylinder
Returns the value of the 'Bottom Radius' attribute.
getBottomRadius() - Method in class org.geppetto.model.values.impl.CylinderImpl
 
getByName(String) - Static method in enum org.geppetto.model.datasources.BooleanOperator
Returns the 'Boolean Operator' literal with the specified name.
getByName(String) - Static method in enum org.geppetto.model.FileFormat
Returns the 'File Format' literal with the specified name.
getByName(String) - Static method in enum org.geppetto.model.values.Connectivity
Returns the 'Connectivity' literal with the specified name.
getByName(String) - Static method in enum org.geppetto.model.values.ImageFormat
Returns the 'Image Format' literal with the specified name.
getChannelDensityTag() - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
getCiClient() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
Deprecated.
for test purposes only
getClassLoader() - Method in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
getCollada() - Method in interface org.geppetto.model.values.Collada
Returns the value of the 'Collada' attribute.
getCollada() - Method in class org.geppetto.model.values.impl.ColladaImpl
 
getCollada() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCollada() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Collada'.
getCollada_Collada() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCollada_Collada() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Collada'.
getCommand() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
 
getComposite() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getComposite() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Composite'.
getComposite_Value() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getComposite_Value() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the map 'Value'.
getCompositeType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getCompositeType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Composite Type'.
getCompositeType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getCompositeType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getCompositeType_Variables() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getCompositeType_Variables() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference list 'Variables'.
getCompositeVisualType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getCompositeVisualType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Composite Visual Type'.
getCompositeVisualType_Variables() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getCompositeVisualType_Variables() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference list 'Variables'.
getCompositeVisualType_VisualGroups() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getCompositeVisualType_VisualGroups() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference list 'Visual Groups'.
getCompoundQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Compound Query'.
getCompoundQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getCompoundQuery_QueryChain() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the containment reference list 'Query Chain'.
getCompoundQuery_QueryChain() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getCompoundRefQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Compound Ref Query'.
getCompoundRefQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getCompoundRefQuery_QueryChain() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the reference list 'Query Chain'.
getCompoundRefQuery_QueryChain() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getConnection() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getConnection() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Connection'.
getConnection_A() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getConnection_A() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'A'.
getConnection_B() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getConnection_B() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'B'.
getConnection_Connectivity() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getConnection_Connectivity() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Connectivity'.
getConnectionID() - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
getConnections() - Method in class org.geppetto.frontend.controllers.ConnectionsManager
Return all the current web socket connections
getConnectionType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getConnectionType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Connection Type'.
getConnectionType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getConnectionType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getConnectionType_Variables() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getConnectionType_Variables() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference list 'Variables'.
getConnectivity() - Method in interface org.geppetto.model.values.Connection
Returns the value of the 'Connectivity' attribute.
getConnectivity() - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
getConnectivity() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getConnectivity() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for enum 'Connectivity'.
getConversionService(List<ModelFormat>, List<ModelFormat>) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getConversionService(ModelFormat, ModelFormat) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getConversionServiceId() - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
getConversionServiceId() - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
getConversionServiceId() - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
getConvertedResultsFolderName() - Method in class org.geppetto.core.conversion.AConversion
 
getCountQuery() - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
getCountQuery() - Method in interface org.geppetto.model.datasources.SimpleQuery
Returns the value of the 'Count Query' attribute.
getCreationDate() - Method in interface org.geppetto.core.data.model.IExperiment
 
getCreationDate() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getCreationDate() - Method in class org.geppetto.persistence.db.model.Experiment
 
getCurrentUser() - Method in class org.geppetto.frontend.dashboard.service.UserResource
 
getCylinder() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCylinder() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Cylinder'.
getCylinder_BottomRadius() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCylinder_BottomRadius() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Bottom Radius'.
getCylinder_Distal() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCylinder_Distal() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Distal'.
getCylinder_Height() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCylinder_Height() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Height'.
getCylinder_TopRadius() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getCylinder_TopRadius() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Top Radius'.
getData() - Method in interface org.geppetto.model.values.Image
Returns the value of the 'Data' attribute.
getData() - Method in class org.geppetto.model.values.impl.ImageImpl
 
getDataBytes() - Method in class org.geppetto.core.recordings.RecordingObject
 
getDataManager() - Static method in class org.geppetto.core.data.DataManagerHelper
 
getDataSource() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Data Source'.
getDataSource() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_DataSourceService() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Data Source Service'.
getDataSource_DataSourceService() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_DependenciesLibrary() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the reference list 'Dependencies Library'.
getDataSource_DependenciesLibrary() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_FetchVariableQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the containment reference 'Fetch Variable Query'.
getDataSource_FetchVariableQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_LibraryConfigurations() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the containment reference list 'Library Configurations'.
getDataSource_LibraryConfigurations() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_Queries() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the containment reference list 'Queries'.
getDataSource_Queries() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_TargetLibrary() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the reference 'Target Library'.
getDataSource_TargetLibrary() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSource_Url() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Url'.
getDataSource_Url() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSourceLibraryConfiguration() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Data Source Library Configuration'.
getDataSourceLibraryConfiguration() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSourceLibraryConfiguration_Format() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Format'.
getDataSourceLibraryConfiguration_Format() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSourceLibraryConfiguration_Library() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the reference 'Library'.
getDataSourceLibraryConfiguration_Library() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSourceLibraryConfiguration_ModelInterpreterId() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Model Interpreter Id'.
getDataSourceLibraryConfiguration_ModelInterpreterId() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDataSources() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Data Sources' containment reference list.
getDataSources() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getDataSourceService() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Data Source Service' attribute.
getDataSourceService() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getDataSourceService(String) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getDatasourcesFactory() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the factory that creates the instances of the model.
getDatasourcesFactory() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getDatasourcesPackage() - Method in interface org.geppetto.model.datasources.DatasourcesFactory
Returns the package supported by this factory.
getDatasourcesPackage() - Method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
 
getDataType() - Method in class org.geppetto.core.recordings.RecordingObject
 
getDate(long) - Method in class org.geppetto.core.utilities.LocalViewSerializer
 
getDate(long) - Method in class org.geppetto.persistence.util.ViewSerializer
 
getDefaultColor() - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
getDefaultColor() - Method in interface org.geppetto.model.values.VisualGroupElement
Returns the value of the 'Default Color' attribute.
getDefaultValue() - Method in interface org.geppetto.model.types.ArgumentType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.ArrayType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.CompositeType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.ConnectionType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.DynamicsType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.ExpressionType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.HTMLType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.ImageType
Returns the value of the 'Default Value' reference.
getDefaultValue() - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.TypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
getDefaultValue() - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
getDefaultValue() - Method in interface org.geppetto.model.types.ParameterType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.PointerType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.PointType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.QuantityType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.StateVariableType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.TextType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.Type
 
getDefaultValue() - Method in interface org.geppetto.model.types.URLType
Returns the value of the 'Default Value' containment reference.
getDefaultValue() - Method in interface org.geppetto.model.types.VisualType
Returns the value of the 'Default Value' containment reference.
getDefaultViewCustomisation(Type) - Method in interface org.geppetto.core.features.IDefaultViewCustomiserFeature
This method returns a chunk of JSON which can contribute to a default view.
getDefaultViewCustomisation(Type) - Method in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
getDefaultViewCustomisations() - Method in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
getDependenciesLibrary() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Dependencies Library' reference list.
getDependenciesLibrary() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getDependentModels() - Method in class org.geppetto.core.model.AModelInterpreter
 
getDependentModels() - Method in interface org.geppetto.core.model.IModelInterpreter
 
getDescription() - Method in interface org.geppetto.core.data.model.IExperiment
 
getDescription() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getDescription() - Method in class org.geppetto.frontend.tests.TestModule
 
getDescription() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
getDescription() - Method in interface org.geppetto.model.datasources.Query
Returns the value of the 'Description' attribute.
getDescription() - Method in class org.geppetto.persistence.db.model.Experiment
 
getDescriptionNode() - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Creates general Model description
getDetails() - Method in interface org.geppetto.core.data.model.IExperiment
 
getDetails() - Method in class org.geppetto.core.data.model.local.LocalExperiment
Operation not supported on local experiment
getDetails() - Method in class org.geppetto.persistence.db.model.Experiment
 
getDiscardMessagesIfQueueFull() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
getDiscardMessagesIfQueueFull() - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
getDistal() - Method in interface org.geppetto.model.values.Cylinder
Returns the value of the 'Distal' containment reference.
getDistal() - Method in class org.geppetto.model.values.impl.CylinderImpl
 
getDomainModel() - Method in interface org.geppetto.model.DomainModel
Returns the value of the 'Domain Model' attribute.
getDomainModel() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Domain Model'.
getDomainModel() - Method in class org.geppetto.model.impl.DomainModelImpl
 
getDomainModel() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getDomainModel() - Method in class org.geppetto.model.types.impl.TypeImpl
 
getDomainModel() - Method in interface org.geppetto.model.types.Type
Returns the value of the 'Domain Model' reference.
getDomainModel_DomainModel() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Domain Model'.
getDomainModel_DomainModel() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getDomainModel_Format() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference 'Format'.
getDomainModel_Format() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getDropboxToken() - Method in interface org.geppetto.core.data.model.IUser
 
getDropboxToken() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getDropboxToken() - Method in interface org.geppetto.core.manager.IDropBoxManager
 
getDropboxToken(String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
getDropboxToken() - Method in class org.geppetto.persistence.db.model.User
 
getDropboxToken() - Method in class org.geppetto.simulation.manager.GeppettoManager
 
getDynamics() - Method in interface org.geppetto.model.values.Dynamics
Returns the value of the 'Dynamics' containment reference.
getDynamics() - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
getDynamics() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getDynamics() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Dynamics'.
getDynamics_Dynamics() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getDynamics_Dynamics() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Dynamics'.
getDynamics_InitialCondition() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getDynamics_InitialCondition() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Initial Condition'.
getDynamicsType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getDynamicsType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Dynamics Type'.
getDynamicsType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getDynamicsType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getElements() - Method in interface org.geppetto.model.values.ArrayValue
Returns the value of the 'Elements' containment reference list.
getElements() - Method in class org.geppetto.model.values.impl.ArrayValueImpl
 
getElements() - Method in class org.geppetto.model.values.impl.PointerImpl
 
getElements() - Method in interface org.geppetto.model.values.Pointer
Returns the value of the 'Elements' containment reference list.
getEMap() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
getEMap() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
getEMap() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
getEndDate() - Method in interface org.geppetto.core.data.model.IExperiment
 
getEndDate() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getEndDate() - Method in class org.geppetto.persistence.db.model.Experiment
 
getError() - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
getError() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getErrorObjects(int) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getErrors(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getErrorsByDay(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getErrorsByMonth(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getErrorsByWeek(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getExecutionDirectoryPath() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
 
getExperiment() - Method in class org.geppetto.core.conversion.AConversion
 
getExperiment() - Method in class org.geppetto.core.simulator.ASimulator
 
getExperiment() - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
getExperiment() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getExperimentId() - Method in interface org.geppetto.model.ExperimentState
Returns the value of the 'Experiment Id' attribute.
getExperimentId() - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
getExperimentLastRun() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getExperimentPath(Scope, long, long, String, String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
getExperiments() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
getExperiments() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getExperiments() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getExperiments() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getExperimentsForProject(long) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getExperimentsForProject(long) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getExperimentsForProject(long) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getExperimentState(String, IExperiment, List<String>) - Method in interface org.geppetto.core.manager.IExperimentManager
 
getExperimentState(String, long, long, List<String>) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
getExperimentState() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Experiment State'.
getExperimentState() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExperimentState(String, IExperiment, List<String>) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
getExperimentState(List<String>, String) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
getExperimentState() - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
getExperimentState_ExperimentId() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Experiment Id'.
getExperimentState_ExperimentId() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExperimentState_ProjectId() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Project Id'.
getExperimentState_ProjectId() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExperimentState_RecordedVariables() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Recorded Variables'.
getExperimentState_RecordedVariables() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExperimentState_SetParameters() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Set Parameters'.
getExperimentState_SetParameters() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExperimentTmpPath(Scope, long, long, String, String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
getExportValue() - Method in enum org.geppetto.model.neuroml.utils.ModelFormatMapping
 
getExpression() - Method in interface org.geppetto.model.values.Expression
Returns the value of the 'Expression' attribute.
getExpression() - Method in interface org.geppetto.model.values.Function
Returns the value of the 'Expression' containment reference.
getExpression() - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
getExpression() - Method in class org.geppetto.model.values.impl.FunctionImpl
 
getExpression() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getExpression() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Expression'.
getExpression_Expression() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getExpression_Expression() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Expression'.
getExpressionEvaluator(String) - Static method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
getExpressionType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getExpressionType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Expression Type'.
getExpressionType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getExpressionType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getExpressionVariable(String, ExpressionNode) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
getExternalDomainModel() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'External Domain Model'.
getExternalDomainModel() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExternalDomainModel_FileFormat() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'File Format'.
getExternalDomainModel_FileFormat() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getExternalProccesses() - Method in class org.geppetto.core.simulator.AExternalProcessSimulator
 
getFeature(GeppettoFeature) - Method in class org.geppetto.core.services.AService
 
getFeature(GeppettoFeature) - Method in interface org.geppetto.core.services.IService
 
getFeature(GeppettoFeature) - Method in class org.geppetto.core.TestSimulator
 
getFeature(GeppettoFeature) - Method in class org.geppetto.core.TestSimulator2
 
getFeatures() - Method in class org.geppetto.frontend.tests.TestModel
 
getFetchVariableQuery() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Fetch Variable Query' containment reference.
getFetchVariableQuery() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getFileFormat() - Method in interface org.geppetto.model.ExternalDomainModel
Returns the value of the 'File Format' attribute.
getFileFormat() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for enum 'File Format'.
getFileFormat() - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
getFileFormat() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getFileName(URL) - Static method in class org.geppetto.core.utilities.URLReader
 
getFileStorage(String) - Method in class org.geppetto.core.s3.S3Manager
 
getFileToExecute() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
 
getFinalValue() - Method in interface org.geppetto.model.values.FunctionPlot
Returns the value of the 'Final Value' attribute.
getFinalValue() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
getFormat() - Method in interface org.geppetto.core.data.model.ISimulationResult
 
getFormat() - Method in class org.geppetto.core.data.model.local.LocalSimulationResult
 
getFormat() - Method in interface org.geppetto.model.datasources.DataSourceLibraryConfiguration
Returns the value of the 'Format' attribute.
getFormat() - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
getFormat() - Method in interface org.geppetto.model.DomainModel
Returns the value of the 'Format' containment reference.
getFormat() - Method in class org.geppetto.model.impl.DomainModelImpl
 
getFormat() - Method in interface org.geppetto.model.values.Image
Returns the value of the 'Format' attribute.
getFormat() - Method in class org.geppetto.model.values.impl.ImageImpl
 
getFormat() - Method in class org.geppetto.persistence.db.model.SimulationResult
 
getFraction() - Method in interface org.geppetto.model.values.VisualPointer
Returns the value of the 'Fraction' attribute.
getFraction() - Method in interface org.geppetto.model.values.VisualReference
Returns the value of the 'Fraction' attribute.
getFunction() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunction() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Function'.
getFunction_Arguments() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunction_Arguments() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference list 'Arguments'.
getFunction_Expression() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunction_Expression() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Expression'.
getFunction_FunctionPlot() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunction_FunctionPlot() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Function Plot'.
getFunctionPlot() - Method in interface org.geppetto.model.values.Function
Returns the value of the 'Function Plot' containment reference.
getFunctionPlot() - Method in class org.geppetto.model.values.impl.FunctionImpl
 
getFunctionPlot() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Function Plot'.
getFunctionPlot_FinalValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot_FinalValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Final Value'.
getFunctionPlot_InitialValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot_InitialValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Initial Value'.
getFunctionPlot_StepValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot_StepValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Step Value'.
getFunctionPlot_Title() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot_Title() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Title'.
getFunctionPlot_XAxisLabel() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot_XAxisLabel() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'XAxis Label'.
getFunctionPlot_YAxisLabel() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getFunctionPlot_YAxisLabel() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'YAxis Label'.
getGeppetto(HttpServletRequest, String) - Method in class org.geppetto.frontend.controllers.Application
 
getGeppettoCellTypesMap() - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
getGeppettoFactory() - Method in interface org.geppetto.model.GeppettoPackage
Returns the factory that creates the instances of the model.
getGeppettoFactory() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoLibrary() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Library'.
getGeppettoLibrary() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoLibrary(Pointer) - Static method in class org.geppetto.model.util.PointerUtility
 
getGeppettoLibrary__GetTypeById() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the 'Get Type By Id' operation.
getGeppettoLibrary__GetTypeById() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoLibrary_SharedTypes() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the reference list 'Shared Types'.
getGeppettoLibrary_SharedTypes() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoLibrary_Types() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Types'.
getGeppettoLibrary_Types() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoManager() - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getGeppettoModel() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
getGeppettoModel() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getGeppettoModel() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Model'.
getGeppettoModel() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getGeppettoModel() - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getGeppettoModel_DataSources() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Data Sources'.
getGeppettoModel_DataSources() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel_Id() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Id'.
getGeppettoModel_Id() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel_Libraries() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Libraries'.
getGeppettoModel_Libraries() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel_Name() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Name'.
getGeppettoModel_Name() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel_Queries() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Queries'.
getGeppettoModel_Queries() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel_Tags() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Tags'.
getGeppettoModel_Tags() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoModel_Variables() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Variables'.
getGeppettoModel_Variables() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getGeppettoPackage() - Method in interface org.geppetto.model.GeppettoFactory
Returns the package supported by this factory.
getGeppettoPackage() - Method in class org.geppetto.model.impl.GeppettoFactoryImpl
 
getGeppettoProject(int) - Method in class org.geppetto.frontend.dashboard.service.GeppettoProjectController
 
getGeppettoProject() - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getGeppettoProjectById(long) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getGeppettoProjectById(long) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getGeppettoProjectById(long) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getGeppettoProjects() - Method in interface org.geppetto.core.data.model.IUser
 
getGeppettoProjects() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getGeppettoProjects(String) - Method in class org.geppetto.frontend.dashboard.service.UserGeppettoProjectsResource
 
getGeppettoProjects() - Method in class org.geppetto.persistence.db.model.User
 
getGeppettoProjectsForUser(String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getGeppettoProjectsForUser(String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getGeppettoProjectsForUser(String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getGroupElements() - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
getGroupElements() - Method in interface org.geppetto.model.values.VisualValue
Returns the value of the 'Group Elements' reference list.
getGson() - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
getGson() - Static method in class org.geppetto.simulation.test.TestUtilities
 
getGuestUser() - Static method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getHash() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
getHash() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
getHash() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
getHDF5() - Method in class org.geppetto.core.model.Recording
 
getHeader() - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
getHeader() - Method in interface org.geppetto.model.datasources.QueryResults
Returns the value of the 'Header' attribute list.
getHeight() - Method in interface org.geppetto.model.values.Cylinder
Returns the value of the 'Height' attribute.
getHeight() - Method in class org.geppetto.model.values.impl.CylinderImpl
 
getHighSpectrumColor() - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
getHighSpectrumColor() - Method in interface org.geppetto.model.values.VisualGroup
Returns the value of the 'High Spectrum Color' attribute.
getHtml() - Method in interface org.geppetto.model.values.HTML
Returns the value of the 'Html' attribute.
getHtml() - Method in class org.geppetto.model.values.impl.HTMLImpl
 
getHTML() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getHTML() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'HTML'.
getHTML_Html() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getHTML_Html() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Html'.
getHTMLType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getHTMLType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'HTML Type'.
getHTMLType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getHTMLType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getId() - Method in interface org.geppetto.core.data.model.IDataEntity
 
getId() - Method in interface org.geppetto.core.data.model.IParameter
 
getId() - Method in interface org.geppetto.core.data.model.IUser
 
getId() - Method in interface org.geppetto.core.data.model.IUserGroup
 
getId() - Method in interface org.geppetto.core.data.model.IView
 
getId() - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
getId() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getId() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getId() - Method in class org.geppetto.core.data.model.local.LocalParameter
 
getId() - Method in class org.geppetto.core.data.model.local.LocalPersistedData
 
getId() - Method in class org.geppetto.core.data.model.local.LocalSimulationResult
 
getId() - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
getId() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getId() - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
getId() - Method in class org.geppetto.core.data.model.local.LocalView
 
getId() - Method in interface org.geppetto.core.simulator.ISimulator
 
getId() - Method in class org.geppetto.core.TestSimulator
 
getId() - Method in class org.geppetto.core.TestSimulator2
 
getId() - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
getId() - Method in interface org.geppetto.model.datasources.QueryResults
Returns the value of the 'Id' attribute.
getId() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Id' attribute.
getId() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getId() - Method in class org.geppetto.model.impl.NodeImpl
 
getId() - Method in enum org.geppetto.model.neuroml.utils.Resources
 
getId() - Method in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
getId() - Method in interface org.geppetto.model.Node
Returns the value of the 'Id' attribute.
getId() - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
getId() - Method in class org.geppetto.persistence.db.model.Experiment
 
getId() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getId() - Method in class org.geppetto.persistence.db.model.Parameter
 
getId() - Method in class org.geppetto.persistence.db.model.PersistedData
 
getId() - Method in class org.geppetto.persistence.db.model.SimulationResult
 
getId() - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
getId() - Method in class org.geppetto.persistence.db.model.User
 
getId() - Method in class org.geppetto.persistence.db.model.UserGroup
 
getId() - Method in class org.geppetto.persistence.db.model.View
 
getId() - Method in class org.geppetto.simulation.test.TestSimulatorService
 
getId() - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
getId() - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
getId() - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
getId() - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
getId() - Method in class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
 
getId() - Method in class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
 
getId() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
getIdsVsSegments() - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getImage() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImage() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Image'.
getImage_Data() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImage_Data() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Data'.
getImage_Format() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImage_Format() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Format'.
getImage_Name() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImage_Name() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Name'.
getImage_Reference() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImage_Reference() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Reference'.
getImageFormat() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImageFormat() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for enum 'Image Format'.
getImageType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImageType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Image Type'.
getImageType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImageType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the reference 'Default Value'.
getImportType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImportType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Import Type'.
getImportType_Autoresolve() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImportType_Autoresolve() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the attribute 'Autoresolve'.
getImportType_ModelInterpreterId() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImportType_ModelInterpreterId() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the attribute 'Model Interpreter Id'.
getImportType_ReferenceURL() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImportType_ReferenceURL() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the attribute 'Reference URL'.
getImportType_Url() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getImportType_Url() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the attribute 'Url'.
getImportValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImportValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Import Value'.
getImportValue_ModelInterpreterId() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getImportValue_ModelInterpreterId() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Model Interpreter Id'.
getIndex() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getIndex(String) - Static method in class org.geppetto.model.util.PointerUtility
 
getIndex() - Method in interface org.geppetto.model.values.ArrayElement
Returns the value of the 'Index' attribute.
getIndex() - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
getIndex() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
getIndex() - Method in interface org.geppetto.model.values.PointerElement
Returns the value of the 'Index' attribute.
getInitialCondition() - Method in interface org.geppetto.model.values.Dynamics
Returns the value of the 'Initial Condition' containment reference.
getInitialCondition() - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
getInitialData(H5File) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
getInitialValue() - Method in interface org.geppetto.model.values.ArrayElement
Returns the value of the 'Initial Value' containment reference.
getInitialValue() - Method in interface org.geppetto.model.values.FunctionPlot
Returns the value of the 'Initial Value' attribute.
getInitialValue() - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
getInitialValue() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
getInitialValues() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
getInitialValues() - Method in interface org.geppetto.model.variables.Variable
Returns the value of the 'Initial Values' map.
getInputModelFormat() - Method in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
getInstance() - Method in interface org.geppetto.core.data.model.IAspectConfiguration
 
getInstance() - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
getInstance() - Static method in class org.geppetto.core.s3.S3Manager
 
getInstance() - Static method in class org.geppetto.frontend.controllers.ConnectionsManager
 
getInstance() - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
getInstance() - Static method in class org.geppetto.simulation.manager.ExperimentRunManager
 
getInstancePath(Variable, Type) - Static method in class org.geppetto.model.util.PointerUtility
 
getInstancePath() - Method in class org.geppetto.model.values.impl.PointerImpl
 
getInstancePath() - Method in interface org.geppetto.model.values.Pointer
 
getIon(String) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Temporary method to guess at ion from name of ion channel It would be better to get ion attribute from channelDensity...
getIonChannelsInCell(Cell) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Gets the ion channels in a cell TODO: replace with call to method in org.neuroml.model.util.CellUtils
getIonColor(String) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Gets an RGB value for ion: Na, Ca, etc.
getISynchable() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'ISynchable'.
getISynchable() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getISynchable_Synched() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Synched'.
getISynchable_Synched() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getJavaType(Class<?>) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
Return the Jackson JavaType for the specified class.
getJsonEncoding(MediaType) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
Determine the JSON encoding to use for the given content type.
getKey() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
getKey() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
getKey() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
getLastLogin() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getLastModified() - Method in interface org.geppetto.core.data.model.IExperiment
 
getLastModified() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getLastModified() - Method in class org.geppetto.persistence.db.model.Experiment
 
getLEMSString() - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
getLength() - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
getLength() - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
getLength() - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
getLibraries() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Libraries' containment reference list.
getLibraries() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getLibraries() - Method in class org.geppetto.model.impl.LibraryManagerImpl
 
getLibraries() - Method in interface org.geppetto.model.LibraryManager
Returns the value of the 'Libraries' containment reference list.
getLibrary() - Method in interface org.geppetto.model.datasources.DataSourceLibraryConfiguration
Returns the value of the 'Library' reference.
getLibrary() - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
getLibrary() - Method in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
getLibraryConfigurations() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Library Configurations' containment reference list.
getLibraryConfigurations() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getLibraryManager() - Static method in class org.geppetto.core.manager.SharedLibraryManager
 
getLibraryManager() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Library Manager'.
getLibraryManager() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getLibraryManager_Libraries() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Libraries'.
getLibraryManager_Libraries() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getListener() - Method in class org.geppetto.core.simulator.ASimulator
 
getLiteral() - Method in enum org.geppetto.model.datasources.BooleanOperator
 
getLiteral() - Method in enum org.geppetto.model.FileFormat
 
getLiteral() - Method in enum org.geppetto.model.values.Connectivity
 
getLiteral() - Method in enum org.geppetto.model.values.ImageFormat
 
getLoadedScene() - Method in class org.geppetto.frontend.controllers.SimulationServerConfig
 
getLogErrorMessage() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
 
getLogin() - Method in interface org.geppetto.core.data.model.IUser
 
getLogin() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getLogin() - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
getLogin() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getLogin() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getLogin() - Method in class org.geppetto.persistence.db.model.User
 
getLoginCount() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getLoginTimeStamps() - Method in interface org.geppetto.core.data.model.IUser
 
getLoginTimeStamps() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getLoginTimeStamps() - Method in class org.geppetto.persistence.db.model.User
 
getLowSpectrumColor() - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
getLowSpectrumColor() - Method in interface org.geppetto.model.values.VisualGroup
Returns the value of the 'Low Spectrum Color' attribute.
getMatchingCriteria() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
getMatchingCriteria() - Method in interface org.geppetto.model.datasources.Query
Returns the value of the 'Matching Criteria' containment reference list.
getMaxBufferSize() - Method in class org.geppetto.simulation.AppConfig
 
getMaxQueueSize() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
getMaxQueueSize() - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
getMDTimeSeries() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getMDTimeSeries() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'MD Time Series'.
getMDTimeSeries_Value() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getMDTimeSeries_Value() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference list 'Value'.
getMessage() - Method in class org.geppetto.core.data.JsonRequestException
 
getMessageSender(WsOutbound, MessageSenderListener) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
getMetadataValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getMetadataValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Metadata Value'.
getMetaType() - Method in class org.geppetto.core.recordings.RecordingObject
 
getMinMessageLengthForCompression() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
getMinMessageLengthForCompression() - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
getModelFormat(String) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getModelFormat() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Model Format'.
getModelFormat() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getModelFormat() - Method in class org.geppetto.model.impl.ModelFormatImpl
 
getModelFormat() - Method in interface org.geppetto.model.ModelFormat
Returns the value of the 'Model Format' attribute.
getModelFormat_ModelFormat() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Model Format'.
getModelFormat_ModelFormat() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getModelInterpreter(Pointer) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getModelInterpreter(GeppettoLibrary) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getModelInterpreterId() - Method in interface org.geppetto.model.datasources.DataSourceLibraryConfiguration
Returns the value of the 'Model Interpreter Id' attribute.
getModelInterpreterId() - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
getModelInterpreterId() - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
getModelInterpreterId() - Method in interface org.geppetto.model.types.ImportType
Returns the value of the 'Model Interpreter Id' attribute.
getModelInterpreterId() - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
getModelInterpreterId() - Method in interface org.geppetto.model.values.ImportValue
Returns the value of the 'Model Interpreter Id' attribute.
getModelInterpreterName() - Method in class org.geppetto.core.beans.ModelInterpreterConfig
 
getModelInterpreterServiceFormats(IModelInterpreter) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getModelParameter() - Method in interface org.geppetto.core.data.model.IAspectConfiguration
 
getModelParameter() - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
getModelParameter() - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
getModelReferences() - Method in class org.geppetto.simulation.visitor.PopulateModelReferencesVisitor
 
getModelSchemaURL() - Static method in class org.geppetto.core.beans.PathConfiguration
 
getName(String, IExperiment, String, boolean) - Static method in class org.geppetto.core.beans.PathConfiguration
 
getName(String, boolean) - Static method in class org.geppetto.core.beans.PathConfiguration
 
getName() - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getName() - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getName() - Method in interface org.geppetto.core.data.model.IExperiment
 
getName() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
getName() - Method in interface org.geppetto.core.data.model.IUser
 
getName() - Method in interface org.geppetto.core.data.model.IUserGroup
 
getName() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getName() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getName() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getName() - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
getName() - Method in interface org.geppetto.core.model.IModelInterpreter
 
getName() - Method in class org.geppetto.core.model.services.ColladaModelInterpreterService
 
getName() - Method in class org.geppetto.core.model.services.ObjModelInterpreterService
 
getName() - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Returns name of recordings file
getName() - Method in interface org.geppetto.core.simulator.ISimulator
 
getName() - Method in class org.geppetto.core.TestModelInterpreter
 
getName() - Method in class org.geppetto.core.TestModelInterpreter2
 
getName() - Method in class org.geppetto.core.TestSimulator
 
getName() - Method in class org.geppetto.core.TestSimulator2
 
getName() - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
getName() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getName() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getName() - Method in class org.geppetto.frontend.tests.TestModel
 
getName() - Method in class org.geppetto.frontend.tests.TestModule
 
getName() - Method in enum org.geppetto.model.datasources.BooleanOperator
 
getName() - Method in enum org.geppetto.model.FileFormat
 
getName() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Name' attribute.
getName() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getName() - Method in class org.geppetto.model.impl.NodeImpl
 
getName() - Method in class org.geppetto.model.impl.TagImpl
 
getName() - Method in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
getName() - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
getName() - Method in interface org.geppetto.model.Node
Returns the value of the 'Name' attribute.
getName() - Method in class org.geppetto.model.nwb.NWBModelInterpreterService
 
getName() - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
getName() - Method in interface org.geppetto.model.Tag
Returns the value of the 'Name' attribute.
getName() - Method in enum org.geppetto.model.values.Connectivity
 
getName() - Method in interface org.geppetto.model.values.Image
Returns the value of the 'Name' attribute.
getName() - Method in enum org.geppetto.model.values.ImageFormat
 
getName() - Method in class org.geppetto.model.values.impl.ImageImpl
 
getName() - Method in class org.geppetto.persistence.db.model.Experiment
 
getName() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getName() - Method in class org.geppetto.persistence.db.model.User
 
getName() - Method in class org.geppetto.persistence.db.model.UserGroup
 
getName() - Method in class org.geppetto.persistence.GeppettoDataManager
 
getName() - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
getName() - Method in class org.geppetto.simulation.test.TestSimulatorService
 
getName() - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
getName() - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
getName() - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
getName() - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
getName() - Method in class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
 
getName() - Method in class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
 
getName() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
getNamesVsSegmentGroups() - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getNetworkHelper() - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
getNetworkHelper() - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
getNeuroMLCell(Component) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
getNeuromlId() - Method in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
 
getNeuroMLIonChannel(Component) - Method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
getNeuroMLString() - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
getNewConnectionId() - Method in class org.geppetto.frontend.controllers.ConnectionsManager
 
getNewServiceInstance(String) - Static method in class org.geppetto.core.services.ServiceCreator
 
getNode() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Node'.
getNode() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getNode__GetPath() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the 'Get Path' operation.
getNode__GetPath() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getNode_Id() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Id'.
getNode_Id() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getNode_Name() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Name'.
getNode_Name() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getNode_Tags() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the reference list 'Tags'.
getNode_Tags() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getNonConsumedSteps() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
getNumberOfResults(List<RunnableQuery>) - Method in interface org.geppetto.core.datasources.IQueryProvider
 
getNWBMetadata(H5File, String) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
getNWBMetadataHelper(H5File, String, CompositeType) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
getObj() - Method in class org.geppetto.model.values.impl.OBJImpl
 
getOBJ() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getObj() - Method in interface org.geppetto.model.values.OBJ
Returns the value of the 'Obj' attribute.
getOBJ() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'OBJ'.
getOBJ_Obj() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getOBJ_Obj() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Obj'.
getObjectMapper() - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
Return the underlying ObjectMapper for this view.
getOrCreateSimpleType(String, List<GeppettoLibrary>) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
getOrder() - Method in class org.geppetto.persistence.db.BundleClassLoaderAspect
 
getOutputFolder() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
 
getOutputModelFormat() - Method in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
getPackage() - Static method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
Deprecated. 
getPackage() - Static method in class org.geppetto.model.impl.GeppettoFactoryImpl
Deprecated. 
getPackage() - Static method in class org.geppetto.model.types.impl.TypesFactoryImpl
Deprecated. 
getPackage() - Static method in class org.geppetto.model.values.impl.ValuesFactoryImpl
Deprecated. 
getPackage() - Static method in class org.geppetto.model.variables.impl.VariablesFactoryImpl
Deprecated. 
getParameter() - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
getParameter() - Method in interface org.geppetto.model.values.VisualGroupElement
Returns the value of the 'Parameter' containment reference.
getParameterFromCondDensity(String) - Method in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
getParameters() - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
getParameters() - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
getParameters() - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
getParameters() - Method in interface org.geppetto.model.datasources.ProcessQuery
Returns the value of the 'Parameters' map.
getParameters() - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
getParameterType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getParameterType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Parameter Type'.
getParameterType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getParameterType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getParent() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getParentIndex() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getParentProject() - Method in interface org.geppetto.core.data.model.IExperiment
 
getParentProject() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getParentProject() - Method in class org.geppetto.persistence.db.model.Experiment
 
getPartialLEMSDocument() - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
getPartialNeuroMLDocument() - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
getParticles() - Method in class org.geppetto.model.values.impl.ParticlesImpl
 
getParticles() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getParticles() - Method in interface org.geppetto.model.values.Particles
Returns the value of the 'Particles' containment reference list.
getParticles() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Particles'.
getParticles_Particles() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getParticles_Particles() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference list 'Particles'.
getPassword() - Method in interface org.geppetto.core.data.model.IUser
 
getPassword() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getPassword() - Method in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
getPassword() - Method in class org.geppetto.persistence.db.model.User
 
getPath() - Method in class org.geppetto.model.impl.NodeImpl
 
getPath() - Method in interface org.geppetto.model.Node
 
getPath() - Method in class org.geppetto.model.values.impl.PointerImpl
 
getPath() - Method in interface org.geppetto.model.values.Pointer
Returns the value of the 'Path' attribute.
getPathInTempFolder(String) - Static method in class org.geppetto.core.beans.PathConfiguration
 
getPathWithoutTypes(String) - Static method in class org.geppetto.model.util.PointerUtility
 
getPersistenceManager() - Static method in class org.geppetto.persistence.db.DBManager
 
getPersistenceManagerFactory() - Static method in class org.geppetto.persistence.util.DBTestData
 
getPhysicalQuantity() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPhysicalQuantity() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Physical Quantity'.
getPhysicalQuantity_Unit() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPhysicalQuantity_Unit() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Unit'.
getPoint(Point3DWithDiam) - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
getPoint(SWCPoint) - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
getPoint() - Method in class org.geppetto.model.values.impl.PointerImpl
 
getPoint() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPoint() - Method in interface org.geppetto.model.values.Pointer
Returns the value of the 'Point' containment reference.
getPoint() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Point'.
getPoint_X() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPoint_X() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'X'.
getPoint_Y() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPoint_Y() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Y'.
getPoint_Z() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPoint_Z() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Z'.
getPointAtFractionAlong(Cell, String, String) - Static method in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
getPointer(String) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
getPointer() - Method in class org.geppetto.model.impl.VariableValueImpl
 
getPointer(Variable, Type, Integer) - Static method in class org.geppetto.model.util.PointerUtility
 
getPointer(GeppettoModel, String) - Static method in class org.geppetto.model.util.PointerUtility
 
getPointer() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointer() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Pointer'.
getPointer() - Method in interface org.geppetto.model.VariableValue
Returns the value of the 'Pointer' containment reference.
getPointer__GetInstancePath() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointer__GetInstancePath() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the 'Get Instance Path' operation.
getPointer_Elements() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointer_Elements() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference list 'Elements'.
getPointer_Path() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointer_Path() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Path'.
getPointer_Point() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointer_Point() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Point'.
getPointerElement() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointerElement() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Pointer Element'.
getPointerElement_Index() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointerElement_Index() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Index'.
getPointerElement_Type() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointerElement_Type() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the reference 'Type'.
getPointerElement_Variable() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getPointerElement_Variable() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the reference 'Variable'.
getPointerType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getPointerType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Pointer Type'.
getPointerType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getPointerType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getPoints() - Method in class org.geppetto.model.swc.format.SWCModel
 
getPointsMap() - Method in class org.geppetto.model.swc.format.SWCModel
 
getPointType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getPointType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Point Type'.
getPointType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getPointType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getPopulateTypes() - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
getPopulation(CompositeType, CompositeType, ArrayType, Resources) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
getPosition() - Method in interface org.geppetto.model.values.ArrayElement
Returns the value of the 'Position' containment reference.
getPosition() - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
getPosition() - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
getPosition() - Method in interface org.geppetto.model.values.VisualValue
Returns the value of the 'Position' containment reference.
getPosition() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
getPosition() - Method in interface org.geppetto.model.variables.Variable
Returns the value of the 'Position' containment reference.
getPrivileges() - Method in interface org.geppetto.core.data.model.IUserGroup
 
getPrivileges() - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
getPrivileges() - Method in class org.geppetto.persistence.db.model.UserGroup
 
getProcessedSteps() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
getProcessingOutputMap() - Method in interface org.geppetto.core.datasources.IQueryProcessor
 
getProcessQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Process Query'.
getProcessQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getProcessQuery_Parameters() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the map 'Parameters'.
getProcessQuery_Parameters() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getProcessQuery_QueryProcessorId() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Query Processor Id'.
getProcessQuery_QueryProcessorId() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getProject() - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
getProject() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getProjectFromJson(Gson, String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getProjectFromJson(Gson, Reader, String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getProjectFromJson(Gson, String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getProjectFromJson(Gson, Reader, String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getProjectFromJson(Gson, String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getProjectFromJson(Gson, Reader, String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getProjectId() - Method in interface org.geppetto.model.ExperimentState
Returns the value of the 'Project Id' attribute.
getProjectId() - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
getProjectPath(Scope, long) - Static method in class org.geppetto.core.beans.PathConfiguration
 
getProjects() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getProjectTmpPath(Scope, long) - Static method in class org.geppetto.core.beans.PathConfiguration
e.g.
getProximal(Segment, Cell) - Static method in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
getQuantity() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getQuantity() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Quantity'.
getQuantity_ScalingFactor() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getQuantity_ScalingFactor() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Scaling Factor'.
getQuantity_Value() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getQuantity_Value() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Value'.
getQuantityType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getQuantityType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Quantity Type'.
getQuantityType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getQuantityType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getQueries() - Method in class org.geppetto.core.model.GeppettoModelAccess
 
getQueries() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Queries' containment reference list.
getQueries() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getQueries() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Queries' containment reference list.
getQueries() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getQuery(String) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
getQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Query'.
getQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQuery() - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
getQuery() - Method in interface org.geppetto.model.datasources.SimpleQuery
Returns the value of the 'Query' attribute.
getQuery(String, GeppettoModel) - Static method in class org.geppetto.model.util.ModelUtility
 
getQuery_Description() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Description'.
getQuery_Description() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQuery_MatchingCriteria() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the containment reference list 'Matching Criteria'.
getQuery_MatchingCriteria() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQuery_ReturnType() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the reference 'Return Type'.
getQuery_ReturnType() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQuery_RunForCount() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Run For Count'.
getQuery_RunForCount() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryChain() - Method in interface org.geppetto.model.datasources.CompoundQuery
Returns the value of the 'Query Chain' containment reference list.
getQueryChain() - Method in interface org.geppetto.model.datasources.CompoundRefQuery
Returns the value of the 'Query Chain' reference list.
getQueryChain() - Method in class org.geppetto.model.datasources.impl.CompoundQueryImpl
 
getQueryChain() - Method in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
 
getQueryMatchingCriteria() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Query Matching Criteria'.
getQueryMatchingCriteria() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryMatchingCriteria_Type() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the reference list 'Type'.
getQueryMatchingCriteria_Type() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryPath() - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
getQueryPath() - Method in interface org.geppetto.model.datasources.RunnableQuery
Returns the value of the 'Query Path' attribute.
getQueryProcessorId() - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
getQueryProcessorId() - Method in interface org.geppetto.model.datasources.ProcessQuery
Returns the value of the 'Query Processor Id' attribute.
getQueryResult() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Query Result'.
getQueryResult() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryResult_Values() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute list 'Values'.
getQueryResult_Values() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryResults() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Query Results'.
getQueryResults() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryResults__GetValue__String_int() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the 'Get Value' operation.
getQueryResults__GetValue__String_int() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryResults_Header() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute list 'Header'.
getQueryResults_Header() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryResults_Id() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Id'.
getQueryResults_Id() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueryResults_Results() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the containment reference list 'Results'.
getQueryResults_Results() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getQueuedExperiments() - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
getQueuedMessageTypes() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
getQueuedMessageTypes() - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
getRadius() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getRadius() - Method in class org.geppetto.model.values.impl.SphereImpl
 
getRadius() - Method in interface org.geppetto.model.values.Sphere
Returns the value of the 'Radius' attribute.
getRandomId() - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getRandomId() - Method in class org.geppetto.persistence.GeppettoDataManager
 
getRecordedVariables() - Method in interface org.geppetto.model.ExperimentState
Returns the value of the 'Recorded Variables' containment reference list.
getRecordedVariables() - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
getRecordingFormat() - Method in class org.geppetto.core.simulator.RecordingReader
 
getRecordingIndex() - Method in class org.geppetto.core.simulator.RecordingReader
 
getRecordingsFile() - Method in class org.geppetto.core.recordings.ConvertDATToRecording
 
getRecordingsFile() - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Returns H5File that was created for this recording
getReference() - Method in interface org.geppetto.model.values.Image
Returns the value of the 'Reference' attribute.
getReference() - Method in class org.geppetto.model.values.impl.ImageImpl
 
getReferencedVariables() - Method in class org.geppetto.model.types.impl.TypeImpl
 
getReferencedVariables() - Method in interface org.geppetto.model.types.Type
Returns the value of the 'Referenced Variables' reference list.
getReferenceURL() - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
getReferenceURL() - Method in interface org.geppetto.model.types.ImportType
Returns the value of the 'Reference URL' attribute.
getRegisteredModelFormats() - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getRelativePath(String) - Method in class org.geppetto.simulation.utilities.GeppettoProjectZipper
Makes a fullpath become a relativve path
getRelativePath(String) - Method in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
Makes a fullpath become a relativve path
getRelativePath(String) - Method in class org.geppetto.simulation.visitor.GeppettoModelVisitor
Makes a fullpath become a relativve path
getReqId() - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
getResult() - Method in interface org.geppetto.core.data.model.ISimulationResult
 
getResult() - Method in class org.geppetto.core.data.model.local.LocalSimulationResult
 
getResult() - Method in class org.geppetto.persistence.db.model.SimulationResult
 
getResults() - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
getResults() - Method in interface org.geppetto.model.datasources.QueryResults
Returns the value of the 'Results' containment reference list.
getResultsFormat(String) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getReturnType() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
getReturnType() - Method in interface org.geppetto.model.datasources.Query
Returns the value of the 'Return Type' reference.
getRoot() - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
Get root of recordings file
getRunnableQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Runnable Query'.
getRunnableQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getRunnableQuery_BooleanOperator() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Boolean Operator'.
getRunnableQuery_BooleanOperator() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getRunnableQuery_QueryPath() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Query Path'.
getRunnableQuery_QueryPath() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getRunnableQuery_TargetVariablePath() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Target Variable Path'.
getRunnableQuery_TargetVariablePath() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getRuntimeExperiment(IExperiment) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
getRuntimeProject(IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
getS3Connection() - Method in class org.geppetto.core.s3.S3Manager
 
getSamplePeriod() - Method in interface org.geppetto.core.simulation.IRunConfiguration
Deprecated.
 
getScalingFactor() - Method in class org.geppetto.model.values.impl.QuantityImpl
 
getScalingFactor() - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
getScalingFactor() - Method in interface org.geppetto.model.values.Quantity
Returns the value of the 'Scaling Factor' attribute.
getScalingFactor() - Method in interface org.geppetto.model.values.TimeSeries
Returns the value of the 'Scaling Factor' attribute.
getScope() - Method in interface org.geppetto.core.manager.IGeppettoManager
 
getScope() - Method in class org.geppetto.core.services.AService
 
getScope() - Method in class org.geppetto.simulation.manager.GeppettoManager
 
getScript() - Method in interface org.geppetto.core.data.model.IExperiment
 
getScript() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
GetScript() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection.GetScript
 
getScript() - Method in class org.geppetto.persistence.db.model.Experiment
 
getSegmentGroupsVsSegIds() - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSegmentGroupsVsSegs() - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSegmentIdsInGroup(String) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSegmentIdsInGroup(SegmentGroup) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSegmentIdsInGroup(LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSegmentsInGroup(String) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSegmentsInGroup(LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Method in class org.geppetto.model.neuroml.utils.CellUtils
 
getSerializableQueryResult() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Serializable Query Result'.
getSerializableQueryResult() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getSerializableQueryResult_Values() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute list 'Values'.
getSerializableQueryResult_Values() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getServerBehaviorMode() - Method in class org.geppetto.frontend.controllers.SimulationServerConfig
 
getServerRootURL(String) - Static method in class org.geppetto.core.utilities.URLReader
 
getService() - Method in class org.geppetto.core.data.DataManagerServiceCreator
A method to get a service of a given type
getService() - Static method in class org.geppetto.frontend.controllers.AuthServiceCreator
A method to get a service of a given type.
getSessionId() - Method in class org.geppetto.core.auth.DefaultAuthService
 
getSessionId() - Method in interface org.geppetto.core.auth.IAuthService
 
getSessionId() - Method in class org.geppetto.persistence.auth.GeppettoAuthentication
 
getSetParameters() - Method in interface org.geppetto.model.ExperimentState
Returns the value of the 'Set Parameters' containment reference list.
getSetParameters() - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
getsetProjectId() - Method in class org.geppetto.core.services.AService
 
getSharedCommonLibrary() - Static method in class org.geppetto.core.manager.SharedLibraryManager
 
getSharedTypes() - Method in interface org.geppetto.model.GeppettoLibrary
Returns the value of the 'Shared Types' reference list.
getSharedTypes() - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
getSimpleQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for class 'Simple Query'.
getSimpleQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getSimpleQuery_CountQuery() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Count Query'.
getSimpleQuery_CountQuery() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getSimpleQuery_Query() - Method in interface org.geppetto.model.datasources.DatasourcesPackage
Returns the meta object for the attribute 'Query'.
getSimpleQuery_Query() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
getSimpleType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getSimpleType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Simple Type'.
getSimulatedInstance() - Method in interface org.geppetto.core.data.model.ISimulationResult
 
getSimulatedInstance() - Method in class org.geppetto.core.data.model.local.LocalSimulationResult
 
getSimulatedInstance() - Method in class org.geppetto.persistence.db.model.SimulationResult
 
getSimulationCapacity() - Method in class org.geppetto.simulation.AppConfig
 
getSimulationObjects(int) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getSimulationResults() - Method in interface org.geppetto.core.data.model.IExperiment
 
getSimulationResults() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getSimulationResults() - Method in class org.geppetto.persistence.db.model.Experiment
 
getSimulations(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getSimulationsByDay(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getSimulationsByMonth(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getSimulationsByWeek(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getSimulationServerConfig() - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
getSimulationTimeAllowance() - Method in interface org.geppetto.core.data.model.IUserGroup
 
getSimulationTimeAllowance() - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
getSimulationTimeAllowance() - Method in class org.geppetto.persistence.db.model.UserGroup
 
getSimulationTreePathType(Component) - Static method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
getSimulator() - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
getSimulator() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getSimulatorConfiguration() - Method in interface org.geppetto.core.data.model.IAspectConfiguration
 
getSimulatorConfiguration() - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
getSimulatorConfiguration() - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
getSimulatorID() - Method in class org.geppetto.core.beans.SimulatorConfig
 
getSimulatorId() - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
getSimulatorId() - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
getSimulatorId() - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
getSimulatorName() - Method in class org.geppetto.core.beans.SimulatorConfig
 
getSimulatorParameters() - Method in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
getSimulatorPath() - Method in class org.geppetto.core.simulator.AExternalProcessSimulator
 
getSimulatorPath() - Method in class org.geppetto.core.simulator.ExternalSimulatorConfig
 
getSimulatorPath() - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
getSimulatorPath() - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
getSimulatorPath() - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
getSimulatorPath() - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
getSimulatorPath() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
getSimulatorServiceFormats(ISimulator) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getSize() - Method in interface org.geppetto.model.types.ArrayType
Returns the value of the 'Size' attribute.
getSize() - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
getSkeletonAnimation() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getSkeletonAnimation() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Skeleton Animation'.
getSkeletonAnimation_SkeletonTransformationSeries() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getSkeletonAnimation_SkeletonTransformationSeries() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the reference list 'Skeleton Transformation Series'.
getSkeletonTransformation() - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
getSkeletonTransformation() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getSkeletonTransformation() - Method in interface org.geppetto.model.values.SkeletonTransformation
Returns the value of the 'Skeleton Transformation' attribute list.
getSkeletonTransformation() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Skeleton Transformation'.
getSkeletonTransformation_SkeletonTransformation() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getSkeletonTransformation_SkeletonTransformation() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute list 'Skeleton Transformation'.
getSkeletonTransformationSeries() - Method in class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
getSkeletonTransformationSeries() - Method in interface org.geppetto.model.values.SkeletonAnimation
Returns the value of the 'Skeleton Transformation Series' reference list.
getSpaceAllowance() - Method in interface org.geppetto.core.data.model.IUserGroup
 
getSpaceAllowance() - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
getSpaceAllowance() - Method in class org.geppetto.persistence.db.model.UserGroup
 
getSphere() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getSphere() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Sphere'.
getSphere_Radius() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getSphere_Radius() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Radius'.
getStartDate() - Method in interface org.geppetto.core.data.model.IExperiment
 
getStartDate() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getStartDate() - Method in class org.geppetto.persistence.db.model.Experiment
 
getStateVariableType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getStateVariableType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'State Variable Type'.
getStateVariableType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getStateVariableType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getStatus() - Method in class org.geppetto.core.data.JsonRequestException
 
getStatus() - Method in interface org.geppetto.core.data.model.IExperiment
 
getStatus() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getStatus() - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
getStatus() - Method in class org.geppetto.persistence.db.model.Experiment
 
getStatus() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
getStepsConsumed() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
getStepValue() - Method in interface org.geppetto.model.values.FunctionPlot
Returns the value of the 'Step Value' attribute.
getStepValue() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
getStorage() - Method in class org.geppetto.frontend.admin.AdminUserObject
 
getStorageSize(String, String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getStorageSizeSimulation(String, String, String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getStringToStringMap() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'String To String Map'.
getStringToStringMap() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getStringToStringMap_Key() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Key'.
getStringToStringMap_Key() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getStringToStringMap_Value() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Value'.
getStringToStringMap_Value() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getStringToValueMap() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getStringToValueMap() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'String To Value Map'.
getStringToValueMap_Key() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getStringToValueMap_Key() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Key'.
getStringToValueMap_Value() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getStringToValueMap_Value() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Value'.
getSummaryId() - Method in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
 
getSuperType(ResourcesDomainType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
getSuperType() - Method in class org.geppetto.model.types.impl.TypeImpl
 
getSuperType() - Method in interface org.geppetto.model.types.Type
Returns the value of the 'Super Type' reference list.
getSupportedInputs() - Method in interface org.geppetto.core.conversion.IConversion
 
getSupportedInputs() - Method in class org.geppetto.core.TestConversion
 
getSupportedInputs() - Method in class org.geppetto.core.TestConversion2
 
getSupportedInputs() - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
getSupportedOuputs(String, IExperiment, IGeppettoProject) - Method in interface org.geppetto.core.manager.IDownloadManager
Writes the model enclosed in a given aspect for a specified format supported by a converter service to a string.
getSupportedOuputs(String, String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
getSupportedOuputs(String, IExperiment, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
getSupportedOutputs(DomainModel) - Method in interface org.geppetto.core.conversion.IConversion
 
getSupportedOutputs() - Method in interface org.geppetto.core.conversion.IConversion
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.core.model.AModelInterpreter
 
getSupportedOutputs(Pointer) - Method in interface org.geppetto.core.model.IModelInterpreter
 
getSupportedOutputs(DomainModel) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
getSupportedOutputs(DomainModel) - Method in class org.geppetto.core.TestConversion
 
getSupportedOutputs() - Method in class org.geppetto.core.TestConversion
 
getSupportedOutputs(DomainModel) - Method in class org.geppetto.core.TestConversion2
 
getSupportedOutputs() - Method in class org.geppetto.core.TestConversion2
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.core.TestModelInterpreter
 
getSupportedOutputs() - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
getSupportedOutputs(DomainModel) - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.model.nwb.NWBModelInterpreterService
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
getSupportedOutputs(Pointer) - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
getSvgScale(float, float, String) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Gets an image of a scalebar in SVG representing the conductance density of a named ion
getSvgScale(float, float, int, int, int) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Gets an image of a scalebar in SVG representing the conductance density of a named ion
getSweepNumbers(H5File) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
getTag() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Tag'.
getTag() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getTag_Name() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the attribute 'Name'.
getTag_Name() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getTag_Tags() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference list 'Tags'.
getTag_Tags() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getTags() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Tags' containment reference list.
getTags() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getTags() - Method in class org.geppetto.model.impl.NodeImpl
 
getTags() - Method in class org.geppetto.model.impl.TagImpl
 
getTags() - Method in interface org.geppetto.model.Node
Returns the value of the 'Tags' reference list.
getTags() - Method in interface org.geppetto.model.Tag
Returns the value of the 'Tags' containment reference list.
getTargetLibrary() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Target Library' reference.
getTargetLibrary() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getTargetVariablePath() - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
getTargetVariablePath() - Method in interface org.geppetto.model.datasources.RunnableQuery
Returns the value of the 'Target Variable Path' attribute.
getTestingProjects(String) - Method in class org.geppetto.frontend.controllers.Application
 
getTestModels() - Method in class org.geppetto.frontend.tests.TestModule
 
getTestModules() - Method in class org.geppetto.frontend.tests.Test
 
getText() - Method in enum org.geppetto.frontend.tests.TestFeatures
 
getText() - Method in class org.geppetto.model.values.impl.TextImpl
 
getText() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getText() - Method in interface org.geppetto.model.values.Text
Returns the value of the 'Text' attribute.
getText() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Text'.
getText_Text() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getText_Text() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Text'.
getTextType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getTextType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Text Type'.
getTextType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getTextType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getTime() - Method in class org.geppetto.core.simulator.ASimulator
 
getTime() - Method in interface org.geppetto.core.simulator.ISimulator
 
getTime() - Method in class org.geppetto.core.TestSimulator
 
getTime() - Method in class org.geppetto.core.TestSimulator2
 
getTimeSeries() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getTimeSeries() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Time Series'.
getTimeSeries_ScalingFactor() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getTimeSeries_ScalingFactor() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Scaling Factor'.
getTimeSeries_Unit() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getTimeSeries_Unit() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Unit'.
getTimeSeries_Value() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getTimeSeries_Value() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute list 'Value'.
getTimeSeriesData(H5File, String) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
getTimeSeriesVariable(String, TimeSeries) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
getTimestep() - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
getTimestep() - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
getTimestep() - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
getTimeStepLength() - Method in interface org.geppetto.core.simulation.IRunConfiguration
Deprecated.
 
getTimeSteps() - Method in interface org.geppetto.core.simulation.IRunConfiguration
Deprecated.
 
getTimeStepUnit() - Method in class org.geppetto.core.simulator.ASimulator
 
getTimeStepUnit() - Method in interface org.geppetto.core.simulator.ISimulator
 
getTimeStepUnit() - Method in class org.geppetto.core.TestSimulator
 
getTimeStepUnit() - Method in class org.geppetto.core.TestSimulator2
 
getTitle() - Method in interface org.geppetto.model.values.FunctionPlot
Returns the value of the 'Title' attribute.
getTitle() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
getToken() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getTopRadius() - Method in interface org.geppetto.model.values.Cylinder
Returns the value of the 'Top Radius' attribute.
getTopRadius() - Method in class org.geppetto.model.values.impl.CylinderImpl
 
getTransportMessage(String, OutboundMessages, String) - Static method in class org.geppetto.frontend.messages.TransportMessageFactory
Create JSON object with appropriate message for its type
getType() - Method in interface org.geppetto.core.data.model.IPersistedData
 
getType() - Method in class org.geppetto.core.data.model.local.LocalPersistedData
 
getType() - Method in interface org.geppetto.core.features.IFeature
 
getType(EClass) - Method in class org.geppetto.core.model.GeppettoModelAccess
Usage commonLibraryAccess.getType(TypesPackage.Literals.PARAMETER_TYPE);
getType(EClass, String) - Method in class org.geppetto.core.model.GeppettoModelAccess
Usage commonLibraryAccess.getType(TypesPackage.Literals.VISUAL_TYPE, "particles");
getType(GeppettoModel, String, String, String) - Method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
getType(GeppettoLibrary, EClass) - Method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
Usage commonLibraryAccess.getType(TypesPackage.Literals.PARAMETER_TYPE);
getType(GeppettoModel, String, String, String) - Method in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
getType(GeppettoLibrary, EClass) - Method in class org.geppetto.core.TestConvertBigDATToRecordingClass
Usage commonLibraryAccess.getType(TypesPackage.Literals.PARAMETER_TYPE);
getType(GeppettoLibrary, EClass) - Method in class org.geppetto.core.TestConvertDATToRecordingClass
Usage commonLibraryAccess.getType(TypesPackage.Literals.PARAMETER_TYPE);
getType(GeppettoModel, String, String, String) - Method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
getType(GeppettoLibrary, EClass) - Method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
Usage commonLibraryAccess.getType(TypesPackage.Literals.PARAMETER_TYPE);
getType() - Method in class org.geppetto.frontend.messaging.MessageSenderEvent
 
getType() - Method in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
getType() - Method in interface org.geppetto.model.datasources.QueryMatchingCriteria
Returns the value of the 'Type' reference list.
getType() - Method in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
getType() - Method in class org.geppetto.model.neuroml.features.LEMSParametersFeature
 
getType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Type'.
getType(GeppettoModel, String) - Static method in class org.geppetto.model.util.PointerUtility
 
getType(Pointer) - Static method in class org.geppetto.model.util.PointerUtility
 
getType(String) - Static method in class org.geppetto.model.util.PointerUtility
 
getType() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
getType() - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
getType() - Method in interface org.geppetto.model.values.PointerElement
Returns the value of the 'Type' reference.
getType() - Method in interface org.geppetto.model.values.VisualGroup
Returns the value of the 'Type' attribute.
getType() - Method in class org.geppetto.persistence.db.model.PersistedData
 
getType() - Method in class org.geppetto.simulation.test.TestModelInterpreterService.TestSetParameterFeature
 
getType__ExtendsType__Type() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType__ExtendsType__Type() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the 'Extends Type' operation.
getType__GetDefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType__GetDefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the 'Get Default Value' operation.
getType_Abstract() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType_Abstract() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the attribute 'Abstract'.
getType_DomainModel() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType_DomainModel() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the reference 'Domain Model'.
getType_ReferencedVariables() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType_ReferencedVariables() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the reference list 'Referenced Variables'.
getType_SuperType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType_SuperType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the reference list 'Super Type'.
getType_VisualType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getType_VisualType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the reference 'Visual Type'.
getTypeById() - Method in interface org.geppetto.model.GeppettoLibrary
 
getTypeById(String) - Method in interface org.geppetto.model.GeppettoLibrary
 
getTypeById() - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
getTypeById(String) - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
getTypedKey() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
getTypedKey() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
getTypedKey() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
getTypedValue() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
getTypedValue() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
getTypedValue() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
getTypeFactory() - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
getTypeFromLibrary(String, GeppettoLibrary) - Static method in class org.geppetto.model.util.ModelUtility
 
getTypes() - Method in interface org.geppetto.model.GeppettoLibrary
Returns the value of the 'Types' containment reference list.
getTypes() - Method in class org.geppetto.model.impl.GeppettoLibraryImpl
 
getTypes() - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
getTypes() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
getTypes() - Method in interface org.geppetto.model.variables.Variable
Returns the value of the 'Types' reference list.
getTypesFactory() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getTypesFactory() - Method in interface org.geppetto.model.types.TypesPackage
Returns the factory that creates the instances of the model.
getTypesMap() - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
getTypesMap() - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
getTypesPackage() - Method in class org.geppetto.model.types.impl.TypesFactoryImpl
 
getTypesPackage() - Method in interface org.geppetto.model.types.TypesFactory
Returns the package supported by this factory.
getTypeToValueMap() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getTypeToValueMap() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for class 'Type To Value Map'.
getTypeToValueMap_Key() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getTypeToValueMap_Key() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the reference 'Key'.
getTypeToValueMap_Value() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getTypeToValueMap_Value() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the containment reference 'Value'.
getUniqueType() - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
getUnit() - Method in class org.geppetto.core.recordings.RecordingObject
 
getUnit() - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
getUnit() - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
getUnit() - Method in class org.geppetto.model.values.impl.UnitImpl
 
getUnit() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getUnit() - Method in interface org.geppetto.model.values.PhysicalQuantity
Returns the value of the 'Unit' containment reference.
getUnit() - Method in interface org.geppetto.model.values.TimeSeries
Returns the value of the 'Unit' containment reference.
getUnit() - Method in interface org.geppetto.model.values.Unit
Returns the value of the 'Unit' attribute.
getUnit(Value) - Static method in class org.geppetto.model.values.util.ValuesUtility
 
getUnit() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Unit'.
getUnit_Unit() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getUnit_Unit() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Unit'.
getUpdateCycle() - Method in class org.geppetto.simulation.AppConfig
 
getURL(String) - Method in interface org.geppetto.core.data.IGeppettoS3Manager
 
getUrl() - Method in interface org.geppetto.core.data.model.IPersistedData
 
getUrl() - Method in class org.geppetto.core.data.model.local.LocalPersistedData
 
getURL(String) - Method in class org.geppetto.core.s3.S3Manager
 
getURL(String, String) - Static method in class org.geppetto.core.utilities.URLReader
 
getURL(String) - Static method in class org.geppetto.core.utilities.URLReader
 
getUrl() - Method in class org.geppetto.frontend.tests.TestModel
 
getUrl() - Method in interface org.geppetto.model.datasources.DataSource
Returns the value of the 'Url' attribute.
getUrl() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
getUrl() - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
getUrl() - Method in interface org.geppetto.model.types.ImportType
Returns the value of the 'Url' attribute.
getUrl() - Method in class org.geppetto.model.values.impl.URLImpl
 
getURL() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getUrl() - Method in interface org.geppetto.model.values.URL
Returns the value of the 'Url' attribute.
getURL() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'URL'.
getUrl() - Method in class org.geppetto.persistence.db.model.PersistedData
 
getURL_Url() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getURL_Url() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Url'.
getURLType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getURLType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'URL Type'.
getURLType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getURLType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getUser() - Method in class org.geppetto.core.auth.DefaultAuthService
 
getUser() - Method in interface org.geppetto.core.auth.IAuthService
 
getUser() - Method in interface org.geppetto.core.manager.IGeppettoManager
FIXME: Move to IAuthService?
getUser() - Method in class org.geppetto.persistence.auth.GeppettoAuthentication
 
getUser() - Method in class org.geppetto.simulation.manager.GeppettoManager
 
getUserByLogin(String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getUserByLogin(String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getUserByLogin(String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getUserGroup() - Static method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getUserGroup() - Method in interface org.geppetto.core.data.model.IUser
 
getUserGroup() - Method in class org.geppetto.core.data.model.local.LocalUser
 
getUserGroup() - Method in class org.geppetto.persistence.db.model.User
 
getUserGroupById(long) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
getUserGroupById(long) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
getUserGroupById(long) - Method in class org.geppetto.persistence.GeppettoDataManager
 
getUsername() - Method in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
getUserObjects(int) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getUsers(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getUsersByDay(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getUsersByMonth(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getUsersByWeek(String) - Method in class org.geppetto.frontend.admin.AdminServlet
 
getValue() - Method in interface org.geppetto.core.data.model.IParameter
 
getValue() - Method in class org.geppetto.core.data.model.local.LocalParameter
 
getValue() - Method in enum org.geppetto.model.datasources.BooleanOperator
 
getValue(String, int) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
getValue(String, int) - Method in interface org.geppetto.model.datasources.QueryResults
 
getValue() - Method in enum org.geppetto.model.FileFormat
 
getValue() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
getValue() - Method in class org.geppetto.model.impl.VariableValueImpl
 
getValue(GeppettoModel, String, Type) - Static method in class org.geppetto.model.util.PointerUtility
 
getValue() - Method in interface org.geppetto.model.values.Composite
Returns the value of the 'Value' map.
getValue() - Method in enum org.geppetto.model.values.Connectivity
 
getValue() - Method in enum org.geppetto.model.values.ImageFormat
 
getValue() - Method in class org.geppetto.model.values.impl.CompositeImpl
 
getValue() - Method in class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
getValue() - Method in class org.geppetto.model.values.impl.QuantityImpl
 
getValue() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
getValue() - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
getValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getValue() - Method in interface org.geppetto.model.values.MDTimeSeries
Returns the value of the 'Value' containment reference list.
getValue() - Method in interface org.geppetto.model.values.Quantity
Returns the value of the 'Value' attribute.
getValue() - Method in interface org.geppetto.model.values.TimeSeries
Returns the value of the 'Value' attribute list.
getValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Value'.
getValue() - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
getValue() - Method in interface org.geppetto.model.VariableValue
Returns the value of the 'Value' containment reference.
getValue() - Method in class org.geppetto.persistence.db.model.Parameter
 
getValueByComponentType(ComponentType) - Static method in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
getValueById(String) - Static method in enum org.geppetto.model.neuroml.utils.Resources
 
getValueById(String) - Static method in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
getValueByValue(String) - Static method in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
 
getValues() - Method in class org.geppetto.core.recordings.RecordingObject
 
getValues() - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
getValues() - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
getValues() - Method in interface org.geppetto.model.datasources.QueryResult
Returns the value of the 'Values' attribute list.
getValues() - Method in interface org.geppetto.model.datasources.SerializableQueryResult
Returns the value of the 'Values' attribute list.
getValuesFactory() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getValuesFactory() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the factory that creates the instances of the model.
getValuesPackage() - Method in class org.geppetto.model.values.impl.ValuesFactoryImpl
 
getValuesPackage() - Method in interface org.geppetto.model.values.ValuesFactory
Returns the package supported by this factory.
getVariable() - Method in interface org.geppetto.core.data.model.IParameter
 
getVariable() - Method in class org.geppetto.core.data.model.local.LocalParameter
 
getVariable() - Method in class org.geppetto.core.recordings.RecordingObject
 
getVariable(GeppettoModel, String, Type, CompositeType) - Method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
getVariable(GeppettoModel, String, Type, CompositeType) - Method in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
getVariable(GeppettoModel, String, Type, CompositeType) - Method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
getVariable(Pointer) - Static method in class org.geppetto.model.util.PointerUtility
 
getVariable(String) - Static method in class org.geppetto.model.util.PointerUtility
 
getVariable() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
getVariable() - Method in interface org.geppetto.model.values.PointerElement
Returns the value of the 'Variable' reference.
getVariable() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariable() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for class 'Variable'.
getVariable() - Method in class org.geppetto.persistence.db.model.Parameter
 
getVariable_AnonymousTypes() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariable_AnonymousTypes() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the containment reference list 'Anonymous Types'.
getVariable_InitialValues() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariable_InitialValues() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the map 'Initial Values'.
getVariable_Position() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariable_Position() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the containment reference 'Position'.
getVariable_Static() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariable_Static() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the attribute 'Static'.
getVariable_Types() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariable_Types() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the meta object for the reference list 'Types'.
getVariables() - Method in interface org.geppetto.model.GeppettoModel
Returns the value of the 'Variables' containment reference list.
getVariables() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
getVariables() - Method in interface org.geppetto.model.types.CompositeType
Returns the value of the 'Variables' containment reference list.
getVariables() - Method in interface org.geppetto.model.types.CompositeVisualType
Returns the value of the 'Variables' containment reference list.
getVariables() - Method in interface org.geppetto.model.types.ConnectionType
Returns the value of the 'Variables' containment reference list.
getVariables() - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
getVariables() - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
getVariables() - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
getVariablesFactory() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
getVariablesFactory() - Method in interface org.geppetto.model.variables.VariablesPackage
Returns the factory that creates the instances of the model.
getVariablesPackage() - Method in class org.geppetto.model.variables.impl.VariablesFactoryImpl
 
getVariablesPackage() - Method in interface org.geppetto.model.variables.VariablesFactory
Returns the package supported by this factory.
getVariableValue() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for class 'Variable Value'.
getVariableValue() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getVariableValue_Pointer() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference 'Pointer'.
getVariableValue_Pointer() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getVariableValue_Value() - Method in interface org.geppetto.model.GeppettoPackage
Returns the meta object for the containment reference 'Value'.
getVariableValue_Value() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
 
getVersionNumber(String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
getView() - Method in interface org.geppetto.core.data.model.IExperiment
 
getView() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
getView() - Method in interface org.geppetto.core.data.model.IView
 
getView() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
getView() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
getView() - Method in class org.geppetto.core.data.model.local.LocalView
 
getView() - Method in class org.geppetto.persistence.db.model.Experiment
 
getView() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
getView() - Method in class org.geppetto.persistence.db.model.View
 
getView(List<JsonObject>) - Static method in class org.geppetto.simulation.manager.ViewProcessor
 
getVisualGroup() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroup() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Visual Group'.
getVisualGroup_HighSpectrumColor() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroup_HighSpectrumColor() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'High Spectrum Color'.
getVisualGroup_LowSpectrumColor() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroup_LowSpectrumColor() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Low Spectrum Color'.
getVisualGroup_Type() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroup_Type() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Type'.
getVisualGroup_VisualGroupElements() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroup_VisualGroupElements() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference list 'Visual Group Elements'.
getVisualGroupElement() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroupElement() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Visual Group Element'.
getVisualGroupElement_DefaultColor() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroupElement_DefaultColor() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the attribute 'Default Color'.
getVisualGroupElement_Parameter() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualGroupElement_Parameter() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Parameter'.
getVisualGroupElements() - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
getVisualGroupElements() - Method in interface org.geppetto.model.values.VisualGroup
Returns the value of the 'Visual Group Elements' containment reference list.
getVisualGroups() - Method in interface org.geppetto.model.types.CompositeVisualType
Returns the value of the 'Visual Groups' containment reference list.
getVisualGroups() - Method in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
 
getVisualObjectFromSegment(Segment, Point3DWithDiam) - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
getVisualObjectIdentifier(Segment) - Static method in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
getVisualObjectsForGroup(String, List<Variable>) - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
getVisualObjectsFromListOfSegments() - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
getVisualObjectsSegments() - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
getVisualType() - Method in class org.geppetto.model.types.impl.TypeImpl
 
getVisualType() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getVisualType() - Method in interface org.geppetto.model.types.Type
Returns the value of the 'Visual Type' reference.
getVisualType() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for class 'Visual Type'.
getVisualType_DefaultValue() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
 
getVisualType_DefaultValue() - Method in interface org.geppetto.model.types.TypesPackage
Returns the meta object for the containment reference 'Default Value'.
getVisualValue() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualValue() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for class 'Visual Value'.
getVisualValue_GroupElements() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualValue_GroupElements() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the reference list 'Group Elements'.
getVisualValue_Position() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
 
getVisualValue_Position() - Method in interface org.geppetto.model.values.ValuesPackage
Returns the meta object for the containment reference 'Position'.
getVisualValueFromPoint(SWCPoint) - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
getVisualVariable() - Method in interface org.geppetto.model.values.VisualPointer
Returns the value of the 'Visual Variable' reference.
getVisualVariable() - Method in interface org.geppetto.model.values.VisualReference
Returns the value of the 'Visual Variable' reference.
getWatchedVariables() - Method in interface org.geppetto.core.data.model.IAspectConfiguration
 
getWatchedVariables() - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
getWatchedVariables() - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
getX() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getX() - Method in class org.geppetto.model.values.impl.PointImpl
 
getX() - Method in interface org.geppetto.model.values.Point
Returns the value of the 'X' attribute.
getXAxisLabel() - Method in interface org.geppetto.model.values.FunctionPlot
Returns the value of the 'XAxis Label' attribute.
getXAxisLabel() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
getXValuesLength() - Method in class org.geppetto.core.recordings.RecordingObject
 
getY() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getY() - Method in class org.geppetto.model.values.impl.PointImpl
 
getY() - Method in interface org.geppetto.model.values.Point
Returns the value of the 'Y' attribute.
getYAxisLabel() - Method in interface org.geppetto.model.values.FunctionPlot
Returns the value of the 'YAxis Label' attribute.
getYAxisLabel() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
getYValuesLength() - Method in class org.geppetto.core.recordings.RecordingObject
 
getZ() - Method in class org.geppetto.model.swc.format.SWCPoint
 
getZ() - Method in class org.geppetto.model.values.impl.PointImpl
 
getZ() - Method in interface org.geppetto.model.values.Point
Returns the value of the 'Z' attribute.
getZipFromDirectory(File) - Method in class org.geppetto.core.utilities.Zipper
 
getZipFromDirectory(File, String) - Method in class org.geppetto.core.utilities.Zipper
 
getZipFromFile(URL) - Method in class org.geppetto.core.utilities.Zipper
 
GGeppettoSwitch() - Constructor for class org.geppetto.model.util.GeppettoPrinterSwitch.GGeppettoSwitch
 
gl - Variable in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
gm - Variable in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
GOOGLE_MAP_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'GOOGLE MAP' literal value.
group - Variable in class org.geppetto.core.data.model.local.LocalUser
 
groupElements - Variable in class org.geppetto.model.values.impl.VisualValueImpl
The cached value of the 'Group Elements' reference list.
GTypesSwitch() - Constructor for class org.geppetto.model.util.GeppettoPrinterSwitch.GTypesSwitch
 
guestId - Static variable in class org.geppetto.core.data.DefaultGeppettoDataManager
 
GVariablesSwitch() - Constructor for class org.geppetto.model.util.GeppettoPrinterSwitch.GVariablesSwitch
 
gzipCompress(String) - Static method in class org.geppetto.frontend.messaging.CompressionUtils
 
gzipCompress(byte[]) - Static method in class org.geppetto.frontend.messaging.CompressionUtils
 

H

handleMergeConflict(String, JsonObject, JsonElement, JsonElement, ViewProcessor.ConflictStrategy) - Static method in class org.geppetto.simulation.manager.ViewProcessor
 
handleMessageSenderEvent(MessageSenderEvent) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
Handle events from the message sender.
handleMessageSenderEvent(MessageSenderEvent) - Method in interface org.geppetto.frontend.messaging.MessageSenderListener
 
hasAdminRights() - Method in class org.geppetto.frontend.admin.AdminServlet
 
hash - Variable in class org.geppetto.model.impl.StringToStringMapImpl
 
hash - Variable in class org.geppetto.model.values.impl.StringToValueMapImpl
 
hash - Variable in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
hashCode() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
hashCode() - Method in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
hashCode() - Method in class org.geppetto.model.impl.ModelFormatImpl
 
hasPersistence - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.UserPrivilegesDT
 
HDF5_VALUE - Static variable in enum org.geppetto.model.FileFormat
The 'HDF5' literal value.
HDF5Reader - Class in org.geppetto.core.common
 
HDF5Reader() - Constructor for class org.geppetto.core.common.HDF5Reader
 
HDF5ReaderTest - Class in org.geppetto.core
 
HDF5ReaderTest() - Constructor for class org.geppetto.core.HDF5ReaderTest
 
header - Variable in class org.geppetto.model.datasources.impl.QueryResultsImpl
The cached value of the 'Header' attribute list.
height - Variable in class org.geppetto.model.values.impl.CylinderImpl
The cached value of the 'Height' attribute.
HEIGHT_EDEFAULT - Static variable in class org.geppetto.model.values.impl.CylinderImpl
The default value of the 'Height' attribute.
HIGH_SPECTRUM - Static variable in class org.geppetto.model.neuroml.visualUtils.ModelInterpreterVisualConstants
 
HIGH_SPECTRUM_COLOR_EDEFAULT - Static variable in class org.geppetto.model.values.impl.VisualGroupImpl
The default value of the 'High Spectrum Color' attribute.
highSpectrumColor - Variable in class org.geppetto.model.values.impl.VisualGroupImpl
The cached value of the 'High Spectrum Color' attribute.
HTML - Interface in org.geppetto.model.values
A representation of the model object 'HTML'.
html - Variable in class org.geppetto.model.values.impl.HTMLImpl
The cached value of the 'Html' attribute.
HTML - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'HTML' class.
HTML - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'HTML' class.
HTML__HTML - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Html' attribute.
HTML__HTML - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Html' attribute feature.
HTML__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
HTML_EDEFAULT - Static variable in class org.geppetto.model.values.impl.HTMLImpl
The default value of the 'Html' attribute.
HTML_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'HTML' class.
HTML_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'HTML' class.
HTML_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'HTML Type' class.
HTML_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'HTML Type' class.
HTML_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
HTML_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
HTML_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
HTML_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
HTML_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
HTML_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
HTML_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
HTML_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
HTML_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
HTML_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
HTML_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
HTML_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
HTML_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
HTML_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
HTML_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'HTML Type' class.
HTML_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'HTML Type' class.
htmlEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
HTMLImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'HTML'.
HTMLImpl() - Constructor for class org.geppetto.model.values.impl.HTMLImpl
 
HTMLType - Interface in org.geppetto.model.types
A representation of the model object 'HTML Type'.
htmlTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
HTMLTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'HTML Type'.
HTMLTypeImpl() - Constructor for class org.geppetto.model.types.impl.HTMLTypeImpl
 

I

i - Static variable in class org.geppetto.core.recordings.GeppettoRecordingCreator
 
IAspectConfiguration - Interface in org.geppetto.core.data.model
 
IAuthService - Interface in org.geppetto.core.auth
 
IConversion - Interface in org.geppetto.core.conversion
 
id - Variable in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
id - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
id - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
id - Variable in class org.geppetto.core.data.model.local.LocalParameter
 
id - Variable in class org.geppetto.core.data.model.local.LocalPersistedData
 
id - Variable in class org.geppetto.core.data.model.local.LocalSimulationResult
 
id - Variable in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
id - Variable in class org.geppetto.core.data.model.local.LocalUser
 
id - Variable in class org.geppetto.core.data.model.local.LocalUserGroup
 
id - Variable in class org.geppetto.core.data.model.local.LocalView
 
id - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.Error
 
id - Variable in class org.geppetto.model.datasources.impl.QueryResultsImpl
The cached value of the 'Id' attribute.
id - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Id' attribute.
id - Variable in class org.geppetto.model.impl.NodeImpl
The cached value of the 'Id' attribute.
id - Variable in class org.geppetto.persistence.db.model.AspectConfiguration
 
id - Variable in class org.geppetto.persistence.db.model.Experiment
 
id - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
id - Variable in class org.geppetto.persistence.db.model.Parameter
 
id - Variable in class org.geppetto.persistence.db.model.PersistedData
 
id - Variable in class org.geppetto.persistence.db.model.SimulationResult
 
id - Variable in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
id - Variable in class org.geppetto.persistence.db.model.User
 
id - Variable in class org.geppetto.persistence.db.model.UserGroup
 
id - Variable in class org.geppetto.persistence.db.model.View
 
ID_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.QueryResultsImpl
The default value of the 'Id' attribute.
ID_EDEFAULT - Static variable in class org.geppetto.model.impl.GeppettoModelImpl
The default value of the 'Id' attribute.
ID_EDEFAULT - Static variable in class org.geppetto.model.impl.NodeImpl
The default value of the 'Id' attribute.
IDataEntity - Interface in org.geppetto.core.data.model
 
IDataSourceManager - Interface in org.geppetto.core.manager
 
IDataSourceService - Interface in org.geppetto.core.datasources
 
IDefaultViewCustomiserFeature - Interface in org.geppetto.core.features
This features lets a ModelInterpreter contribute a default view for a Geppetto Project
IDownloadManager - Interface in org.geppetto.core.manager
 
IDropBoxManager - Interface in org.geppetto.core.manager
 
idsVsSegments - Variable in class org.geppetto.model.neuroml.utils.CellUtils
 
IExperiment - Interface in org.geppetto.core.data.model
 
IExperimentListener - Interface in org.geppetto.simulation
 
IExperimentManager - Interface in org.geppetto.core.manager
 
IExternalSimulatorCallbackListener - Interface in org.geppetto.core.simulation
 
IExternalUploadService - Interface in org.geppetto.core.services
Interface use for uploading and downloading files to an online service, e.g.
IFeature - Interface in org.geppetto.core.features
A feature defines an atomic functionality that can be implemented by a service.
IGeppettoDataManager - Interface in org.geppetto.core.data
This interface contains methods to deal with the persisted data model of Geppetto this includes fetching stuff from the database (or whatever data source) and adding stuff to the database
IGeppettoManager - Interface in org.geppetto.core.manager
 
IGeppettoManagerCallbackListener - Interface in org.geppetto.core.simulation
 
IGeppettoProject - Interface in org.geppetto.core.data.model
 
IGeppettoS3Manager - Interface in org.geppetto.core.data
This interface contains methods to deal with persisting stuff to S3.
IIP_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'IIP' literal value.
Image - Interface in org.geppetto.model.values
A representation of the model object 'Image'.
IMAGE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Image' class.
IMAGE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Image' class.
IMAGE__DATA - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Data' attribute.
IMAGE__DATA - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Data' attribute feature.
IMAGE__FORMAT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Format' attribute.
IMAGE__FORMAT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Format' attribute feature.
IMAGE__NAME - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Name' attribute.
IMAGE__NAME - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Name' attribute feature.
IMAGE__REFERENCE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Reference' attribute.
IMAGE__REFERENCE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Reference' attribute feature.
IMAGE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
IMAGE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Image' class.
IMAGE_FORMAT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Image Format' enum.
IMAGE_FORMAT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Image Format' enum.
IMAGE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Image' class.
IMAGE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Image Type' class.
IMAGE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Image Type' class.
IMAGE_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
IMAGE_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
IMAGE_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
IMAGE_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
IMAGE_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' reference.
IMAGE_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' reference feature.
IMAGE_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
IMAGE_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
IMAGE_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
IMAGE_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
IMAGE_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
IMAGE_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
IMAGE_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
IMAGE_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
IMAGE_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Image Type' class.
IMAGE_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Image Type' class.
imageEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ImageFormat - Enum in org.geppetto.model.values
A representation of the literals of the enumeration 'Image Format', and utility methods for working with them.
ImageFormat(int, String, String) - Constructor for enum org.geppetto.model.values.ImageFormat
Only this class can construct instances.
imageFormatEEnum - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ImageImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Image'.
ImageImpl() - Constructor for class org.geppetto.model.values.impl.ImageImpl
 
ImageType - Interface in org.geppetto.model.types
A representation of the model object 'Image Type'.
imageTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ImageTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Image Type'.
ImageTypeImpl() - Constructor for class org.geppetto.model.types.impl.ImageTypeImpl
 
IModelInterpreter - Interface in org.geppetto.core.model
 
IMPORT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Import Type' class.
IMPORT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Import Type' class.
IMPORT_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
IMPORT_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
IMPORT_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
IMPORT_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
IMPORT_TYPE__AUTORESOLVE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Autoresolve' attribute.
IMPORT_TYPE__AUTORESOLVE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Autoresolve' attribute feature.
IMPORT_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
IMPORT_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
IMPORT_TYPE__MODEL_INTERPRETER_ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Model Interpreter Id' attribute.
IMPORT_TYPE__MODEL_INTERPRETER_ID - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Model Interpreter Id' attribute feature.
IMPORT_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
IMPORT_TYPE__REFERENCE_URL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Reference URL' attribute.
IMPORT_TYPE__REFERENCE_URL - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Reference URL' attribute feature.
IMPORT_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
IMPORT_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
IMPORT_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
IMPORT_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
IMPORT_TYPE__URL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Url' attribute.
IMPORT_TYPE__URL - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Url' attribute feature.
IMPORT_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
IMPORT_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Import Type' class.
IMPORT_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Import Type' class.
IMPORT_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Import Value' class.
IMPORT_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Import Value' class.
IMPORT_VALUE__MODEL_INTERPRETER_ID - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Model Interpreter Id' attribute.
IMPORT_VALUE__MODEL_INTERPRETER_ID - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Model Interpreter Id' attribute feature.
IMPORT_VALUE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
IMPORT_VALUE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Import Value' class.
IMPORT_VALUE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Import Value' class.
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in interface org.geppetto.core.model.IModelInterpreter
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.core.model.services.ColladaModelInterpreterService
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.core.model.services.ObjModelInterpreterService
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.core.TestModelInterpreter
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.core.TestModelInterpreter2
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.model.nwb.NWBModelInterpreterService
 
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
ImportType - Interface in org.geppetto.model.types
A representation of the model object 'Import Type'.
importType(URL, String, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
importTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ImportTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Import Type'.
ImportTypeImpl() - Constructor for class org.geppetto.model.types.impl.ImportTypeImpl
 
ImportTypesVisitor - Class in org.geppetto.simulation.visitor
This visitor traverses the Geppetto Model and creates the variables and types delegating to the model interpreter creation of the domain specific types
ImportTypesVisitor(Map<GeppettoLibrary, IModelInterpreter>, GeppettoModelAccess, boolean, String) - Constructor for class org.geppetto.simulation.visitor.ImportTypesVisitor
 
ImportTypesVisitor(Map<GeppettoLibrary, IModelInterpreter>, GeppettoModelAccess, boolean, String, Boolean) - Constructor for class org.geppetto.simulation.visitor.ImportTypesVisitor
 
importValue(ImportValue) - Method in class org.geppetto.core.model.AModelInterpreter
 
importValue(ImportValue) - Method in interface org.geppetto.core.model.IModelInterpreter
 
importValue(ImportValue) - Method in class org.geppetto.core.TestModelInterpreter
 
importValue(ImportValue) - Method in class org.geppetto.core.TestModelInterpreter2
 
importValue(ImportValue) - Method in class org.geppetto.model.nwb.NWBModelInterpreterService
 
ImportValue - Interface in org.geppetto.model.values
A representation of the model object 'Import Value'.
importValue(ImportValue) - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
importValueEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ImportValueImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Import Value'.
ImportValueImpl() - Constructor for class org.geppetto.model.values.impl.ImportValueImpl
 
InboundMessages - Enum in org.geppetto.frontend.messages
 
InboundMessages(String) - Constructor for enum org.geppetto.frontend.messages.InboundMessages
 
increaseExperimentCounter(IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
incrementProcessedSteps() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
incrementStepsConsumed() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
index - Variable in class org.geppetto.model.swc.format.SWCPoint
 
index - Variable in class org.geppetto.model.values.impl.ArrayElementImpl
The cached value of the 'Index' attribute.
index - Variable in class org.geppetto.model.values.impl.PointerElementImpl
The cached value of the 'Index' attribute.
INDEX_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ArrayElementImpl
The default value of the 'Index' attribute.
INDEX_EDEFAULT - Static variable in class org.geppetto.model.values.impl.PointerElementImpl
The default value of the 'Index' attribute.
info(String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
init(String) - Method in class org.geppetto.core.services.DropboxUploadService
 
init() - Method in class org.geppetto.frontend.controllers.GeppettoServlet
 
init() - Static method in class org.geppetto.model.datasources.impl.DatasourcesFactoryImpl
Creates the default factory implementation.
init() - Static method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
Creates, registers, and initializes the Package for this model, and for any others upon which it depends.
init() - Static method in class org.geppetto.model.impl.GeppettoFactoryImpl
Creates the default factory implementation.
init() - Static method in class org.geppetto.model.impl.GeppettoPackageImpl
Creates, registers, and initializes the Package for this model, and for any others upon which it depends.
init() - Static method in class org.geppetto.model.types.impl.TypesFactoryImpl
Creates the default factory implementation.
init() - Static method in class org.geppetto.model.types.impl.TypesPackageImpl
Creates, registers, and initializes the Package for this model, and for any others upon which it depends.
init() - Static method in class org.geppetto.model.values.impl.ValuesFactoryImpl
Creates the default factory implementation.
init() - Static method in class org.geppetto.model.values.impl.ValuesPackageImpl
Creates, registers, and initializes the Package for this model, and for any others upon which it depends.
init() - Static method in class org.geppetto.model.variables.impl.VariablesFactoryImpl
Creates the default factory implementation.
init() - Static method in class org.geppetto.model.variables.impl.VariablesPackageImpl
Creates, registers, and initializes the Package for this model, and for any others upon which it depends.
init(IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
init() - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
INITIAL_VALUE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The default value of the 'Initial Value' attribute.
initialCondition - Variable in class org.geppetto.model.values.impl.DynamicsImpl
The cached value of the 'Initial Condition' containment reference.
initialiseNodeFromComponent(Node, Component) - Static method in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
initialiseNodeFromString(Node, String) - Static method in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
initialize(DataSource, GeppettoModelAccess) - Method in interface org.geppetto.core.datasources.IDataSourceService
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.core.simulator.ASimulator
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in interface org.geppetto.core.simulator.ISimulator
This interface assumes the simulator will use the domain model (IModel) to simulate.
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.core.TestSimulator
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.core.TestSimulator2
 
initialize(WsOutbound) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.simulation.test.TestSimulatorService
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
initialize(DomainModel, IAspectConfiguration, ExperimentState, ISimulatorCallbackListener, GeppettoModelAccess) - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
initialized - Variable in class org.geppetto.core.simulator.ASimulator
 
initializePackageContents() - Method in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
Complete the initialization of the package and its meta-model.
initializePackageContents() - Method in class org.geppetto.model.impl.GeppettoPackageImpl
Complete the initialization of the package and its meta-model.
initializePackageContents() - Method in class org.geppetto.model.types.impl.TypesPackageImpl
Complete the initialization of the package and its meta-model.
initializePackageContents() - Method in class org.geppetto.model.values.impl.ValuesPackageImpl
Complete the initialization of the package and its meta-model.
initializePackageContents() - Method in class org.geppetto.model.variables.impl.VariablesPackageImpl
Complete the initialization of the package and its meta-model.
initializeServiceRegistry() - Static method in class org.geppetto.core.ServiceRegistryTest
 
initializeServiceRegistry() - Static method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
initialValue - Variable in class org.geppetto.model.values.impl.ArrayElementImpl
The cached value of the 'Initial Value' containment reference.
initialValue - Variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The cached value of the 'Initial Value' attribute.
initialValues - Variable in class org.geppetto.model.variables.impl.VariableImpl
The cached value of the 'Initial Values' map.
innerFolderName - Variable in class org.geppetto.core.utilities.Zipper
 
inputModelFormat - Variable in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
inputModelFormats - Static variable in class org.geppetto.model.neuroml.services.LEMSConversionService
 
instance - Variable in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
instance - Static variable in class org.geppetto.core.s3.S3Manager
 
instance - Static variable in class org.geppetto.frontend.controllers.AuthServiceCreator
 
instance - Variable in class org.geppetto.persistence.db.model.AspectConfiguration
 
instance - Static variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
IParameter - Interface in org.geppetto.core.data.model
 
IPersistedData - Interface in org.geppetto.core.data.model
 
IProjectManager - Interface in org.geppetto.core.manager
 
IQueryListener - Interface in org.geppetto.core.datasources
 
IQueryProcessor - Interface in org.geppetto.core.datasources
 
IQueryProvider - Interface in org.geppetto.core.datasources
 
IRunConfiguration - Interface in org.geppetto.core.simulation
Deprecated.
IRuntimeTreeManager - Interface in org.geppetto.core.manager
 
isAbstract() - Method in class org.geppetto.model.types.impl.TypeImpl
 
isAbstract() - Method in interface org.geppetto.model.types.Type
Returns the value of the 'Abstract' attribute.
isAuthenticated(String) - Method in class org.geppetto.core.auth.DefaultAuthService
 
isAuthenticated(String) - Method in interface org.geppetto.core.auth.IAuthService
 
isAuthenticated(String) - Method in class org.geppetto.persistence.auth.GeppettoAuthentication
 
isAutoresolve() - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
isAutoresolve() - Method in interface org.geppetto.model.types.ImportType
Returns the value of the 'Autoresolve' attribute.
isCompressionEnabled() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
isCompressionEnabled() - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
isCreated - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
isCreated - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
isCreated - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
isCreated - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
isCreated - Variable in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
isDefault() - Method in class org.geppetto.core.auth.DefaultAuthService
 
isDefault() - Method in interface org.geppetto.core.auth.IAuthService
 
isDefault() - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
isDefault() - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
isDefault() - Method in class org.geppetto.persistence.auth.GeppettoAuthentication
 
isDefault() - Method in class org.geppetto.persistence.GeppettoDataManager
 
IService - Interface in org.geppetto.core.services
This interface defines the common functionalities to be implemented by every service.
ISetParameterFeature - Interface in org.geppetto.core.features
This interface allows the users to change the value of the parameters in a given model.
isFactoryForType(Object) - Method in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
Returns whether this factory is applicable for the type of the object.
isFactoryForType(Object) - Method in class org.geppetto.model.types.util.TypesAdapterFactory
Returns whether this factory is applicable for the type of the object.
isFactoryForType(Object) - Method in class org.geppetto.model.util.GeppettoAdapterFactory
Returns whether this factory is applicable for the type of the object.
isFactoryForType(Object) - Method in class org.geppetto.model.values.util.ValuesAdapterFactory
Returns whether this factory is applicable for the type of the object.
isFactoryForType(Object) - Method in class org.geppetto.model.variables.util.VariablesAdapterFactory
Returns whether this factory is applicable for the type of the object.
isForceResolve() - Method in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
ISimulationResult - Interface in org.geppetto.core.data.model
 
ISimulator - Interface in org.geppetto.core.simulator
 
ISimulatorCallbackListener - Interface in org.geppetto.core.simulation
 
ISimulatorConfiguration - Interface in org.geppetto.core.data.model
 
isInited - Static variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
isInited - Static variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
isInited - Static variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
isInited - Static variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
isInited - Static variable in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
isInitialized() - Method in class org.geppetto.core.simulator.ASimulator
 
isInitialized() - Method in interface org.geppetto.core.simulator.ISimulator
 
isInitialized() - Method in class org.geppetto.core.TestSimulator
 
isInitialized() - Method in class org.geppetto.core.TestSimulator2
 
isInitialized - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
isInitialized - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
isInitialized - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
isInitialized - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
isInitialized - Variable in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
isMac() - Static method in class org.geppetto.simulator.external.services.Utilities
 
isNeuroMLInclusion(String) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
isPaused() - Method in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
isProjectOpen(IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
isPublic() - Method in interface org.geppetto.core.data.model.IExperiment
 
isPublic() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
isPublic() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
isPublic - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
isPublic() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
isPublic - Variable in class org.geppetto.persistence.db.model.Experiment
 
isPublic() - Method in class org.geppetto.persistence.db.model.Experiment
 
isPublic - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
isPublic() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
isQueuedMessageType(OutboundMessages) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
isQueuedMessageType(OutboundMessages) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
isQueuingEnabled() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
isQueuingEnabled() - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
isReadOnly - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
isRunForCount() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
isRunForCount() - Method in interface org.geppetto.model.datasources.Query
Returns the value of the 'Run For Count' attribute.
isSimulationLoaded - Variable in class org.geppetto.frontend.controllers.SimulationServerConfig
 
isSimulationLoaded() - Method in class org.geppetto.frontend.controllers.SimulationServerConfig
 
isSomaPoint() - Method in class org.geppetto.model.swc.format.SWCPoint
 
isStatic() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
isStatic() - Method in interface org.geppetto.model.variables.Variable
Returns the value of the 'Static' attribute.
isSupported(GeppettoFeature) - Method in class org.geppetto.core.services.AService
 
isSupported(GeppettoFeature) - Method in interface org.geppetto.core.services.IService
 
isSupported(GeppettoFeature) - Method in class org.geppetto.core.TestSimulator
 
isSupported(GeppettoFeature) - Method in class org.geppetto.core.TestSimulator2
 
isSupported(GeppettoFeature) - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
isSwitchFor(EPackage) - Method in class org.geppetto.model.datasources.util.DatasourcesSwitch
Checks whether this is a switch for the given package.
isSwitchFor(EPackage) - Method in class org.geppetto.model.types.util.TypesSwitch
Checks whether this is a switch for the given package.
isSwitchFor(EPackage) - Method in class org.geppetto.model.util.GeppettoSwitch
Checks whether this is a switch for the given package.
isSwitchFor(EPackage) - Method in class org.geppetto.model.values.util.ValuesSwitch
Checks whether this is a switch for the given package.
isSwitchFor(EPackage) - Method in class org.geppetto.model.variables.util.VariablesSwitch
Checks whether this is a switch for the given package.
isSynched() - Method in class org.geppetto.model.impl.NodeImpl
 
isSynched() - Method in class org.geppetto.model.impl.TagImpl
 
isSynched() - Method in interface org.geppetto.model.ISynchable
Returns the value of the 'Synched' attribute.
isSynched() - Method in class org.geppetto.model.values.impl.ValueImpl
 
isUnix() - Static method in class org.geppetto.simulator.external.services.Utilities
 
isUserProject(long) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
isVolatile() - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
isVolatile() - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
isVolatile() - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
isWindows() - Static method in class org.geppetto.simulator.external.services.Utilities
 
ISYNCHABLE - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'ISynchable' class.
ISYNCHABLE - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'ISynchable' class.
ISynchable - Interface in org.geppetto.model
A representation of the model object 'ISynchable'.
ISYNCHABLE__SYNCHED - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Synched' attribute.
ISYNCHABLE__SYNCHED - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Synched' attribute feature.
ISYNCHABLE_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'ISynchable' class.
ISYNCHABLE_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'ISynchable' class.
iSynchableEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
IUser - Interface in org.geppetto.core.data.model
 
IUserGroup - Interface in org.geppetto.core.data.model
 
IView - Interface in org.geppetto.core.data.model
 

J

jlemsModelInterpreterConfig - Variable in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
jneuromlExternalSimulatorConfig - Variable in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
jneuromlSimulatorConfig - Variable in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
JNeuroMLSimulatorService - Class in org.geppetto.simulator.external.services
Wrapper class for jNeuroML
JNeuroMLSimulatorService() - Constructor for class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
JNeuroMLSimulatorServiceTest - Class in org.geppetto.simulator.external.tests
 
JNeuroMLSimulatorServiceTest() - Constructor for class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
jobStatus - Variable in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
JPEG_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'JPEG' literal value.
JsonObjectExtensionConflictException(String) - Constructor for exception org.geppetto.simulation.manager.ViewProcessor.JsonObjectExtensionConflictException
 
JsonRequestException - Class in org.geppetto.core.data
 
JsonRequestException(String, HttpStatus) - Constructor for class org.geppetto.core.data.JsonRequestException
 
JSONUtility - Class in org.geppetto.core.common
 
JSONUtility() - Constructor for class org.geppetto.core.common.JSONUtility
 

K

key - Variable in class org.geppetto.model.impl.StringToStringMapImpl
The cached value of the 'Key' attribute.
key - Variable in class org.geppetto.model.values.impl.StringToValueMapImpl
The cached value of the 'Key' attribute.
key - Variable in class org.geppetto.model.variables.impl.TypeToValueMapImpl
The cached value of the 'Key' reference.
KEY_EDEFAULT - Static variable in class org.geppetto.model.impl.StringToStringMapImpl
The default value of the 'Key' attribute.
KEY_EDEFAULT - Static variable in class org.geppetto.model.values.impl.StringToValueMapImpl
The default value of the 'Key' attribute.
keyValueSplit(String, String) - Static method in class org.geppetto.core.utilities.StringSplitter
 

L

lastLogin - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
lastLoginDate - Variable in class org.geppetto.core.data.model.local.LocalUser
 
lastModified - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
lastModified - Variable in class org.geppetto.persistence.db.model.Experiment
 
lastRan - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
lastRan - Variable in class org.geppetto.persistence.db.model.Experiment
 
lems - Variable in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
LEMSConversionService - Class in org.geppetto.model.neuroml.services
 
LEMSConversionService() - Constructor for class org.geppetto.model.neuroml.services.LEMSConversionService
 
LEMSConversionServiceTest - Class in org.geppetto.model.neuroml.test
 
LEMSConversionServiceTest() - Constructor for class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
lemsDocument - Variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
lemsExternalSimulatorConfig - Variable in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
lemsFormat - Variable in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
LEMSModelInterpreterService - Class in org.geppetto.model.neuroml.services
 
LEMSModelInterpreterService() - Constructor for class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
LEMSModelInterpreterServiceTest - Class in org.geppetto.model.neuroml.test
 
LEMSModelInterpreterServiceTest() - Constructor for class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
 
LEMSParametersFeature - Class in org.geppetto.model.neuroml.features
Set a Lems Parameter (State Variable)
LEMSParametersFeature() - Constructor for class org.geppetto.model.neuroml.features.LEMSParametersFeature
 
lemsSimulatorConfig - Variable in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
LEMSSimulatorService - Class in org.geppetto.simulator.external.services
Wrapper class for LEMS
LEMSSimulatorService() - Constructor for class org.geppetto.simulator.external.services.LEMSSimulatorService
 
length - Variable in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
length - Variable in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
libraries - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Libraries' containment reference list.
libraries - Variable in class org.geppetto.model.impl.LibraryManagerImpl
The cached value of the 'Libraries' containment reference list.
library - Variable in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
The cached value of the 'Library' reference.
library - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
library - Variable in class org.geppetto.model.nwb.ReadNWBFile
 
LIBRARY_MANAGER - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Library Manager' class.
LIBRARY_MANAGER - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Library Manager' class.
LIBRARY_MANAGER__LIBRARIES - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Libraries' containment reference list.
LIBRARY_MANAGER__LIBRARIES - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Libraries' containment reference list feature.
LIBRARY_MANAGER_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Library Manager' class.
LIBRARY_MANAGER_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Library Manager' class.
libraryConfigurations - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Library Configurations' containment reference list.
LibraryManager - Interface in org.geppetto.model
A representation of the model object 'Library Manager'.
libraryManagerEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
LibraryManagerImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Library Manager'.
LibraryManagerImpl() - Constructor for class org.geppetto.model.impl.LibraryManagerImpl
 
link(String) - Method in class org.geppetto.core.services.DropboxUploadService
 
link(String) - Method in interface org.geppetto.core.services.IExternalUploadService
 
linkDropBox(String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
linkDropBoxAccount(String) - Method in interface org.geppetto.core.manager.IDropBoxManager
Link the user dropbox account with the geppetto account
linkDropBoxAccount(String) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
listener - Variable in class org.geppetto.core.simulator.ASimulator
 
listener - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
listeners - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 
listJobs(CiClient) - Static method in class org.geppetto.simulator.remote.services.NSGUtilities
 
literal - Variable in enum org.geppetto.model.datasources.BooleanOperator
 
literal - Variable in enum org.geppetto.model.FileFormat
 
literal - Variable in enum org.geppetto.model.values.Connectivity
 
literal - Variable in enum org.geppetto.model.values.ImageFormat
 
loadedScene - Variable in class org.geppetto.frontend.controllers.SimulationServerConfig
 
loadExperiment(String, IExperiment) - Method in interface org.geppetto.core.manager.IExperimentManager
 
loadExperiment(String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
loadExperiment(String, IExperiment) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
loadExperiments() - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
LoadGeppettoModelVisitor - Class in org.geppetto.simulation.visitor
This visitor loads a simulation
LoadGeppettoModelVisitor() - Constructor for class org.geppetto.simulation.visitor.LoadGeppettoModelVisitor
 
loadGeppettoProject(String, IGeppettoProject, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
loadGeppettoProjects() - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
loadNeuroMLFile(String) - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
loadProject(String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IProjectManager
Loads a Geppetto project
loadProject(String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
loadProjectFromContent(String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
loadProjectFromId(String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
loadProjectFromURL(String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
LocalAspectConfiguration - Class in org.geppetto.core.data.model.local
 
LocalAspectConfiguration(long, String, List<String>, List<LocalParameter>, LocalSimulatorConfiguration) - Constructor for class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
LocalExperiment - Class in org.geppetto.core.data.model.local
 
LocalExperiment(long, List<LocalAspectConfiguration>, String, String, Date, Date, ExperimentStatus, List<LocalSimulationResult>, Date, Date, IGeppettoProject) - Constructor for class org.geppetto.core.data.model.local.LocalExperiment
 
localFileMap - Variable in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
localGeppettoModelFile - Variable in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
localGeppettoModelFile - Variable in class org.geppetto.simulation.visitor.PersistModelVisitor
 
LocalGeppettoProject - Class in org.geppetto.core.data.model.local
 
LocalGeppettoProject(long, String, List<LocalExperiment>, LocalPersistedData) - Constructor for class org.geppetto.core.data.model.local.LocalGeppettoProject
 
LocalParameter - Class in org.geppetto.core.data.model.local
 
LocalParameter(long, String, String) - Constructor for class org.geppetto.core.data.model.local.LocalParameter
 
LocalPersistedData - Class in org.geppetto.core.data.model.local
 
LocalPersistedData(long, String, PersistedDataType) - Constructor for class org.geppetto.core.data.model.local.LocalPersistedData
 
LocalSimulationResult - Class in org.geppetto.core.data.model.local
 
LocalSimulationResult(long, String, LocalPersistedData, ResultsFormat) - Constructor for class org.geppetto.core.data.model.local.LocalSimulationResult
 
LocalSimulatorConfiguration - Class in org.geppetto.core.data.model.local
 
LocalSimulatorConfiguration(long, String, String, float, float, Map<String, String>) - Constructor for class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
localTest - Static variable in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
localTest - Static variable in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
LocalUser - Class in org.geppetto.core.data.model.local
 
LocalUser(long, String, String, String, String, List<LocalGeppettoProject>, IUserGroup) - Constructor for class org.geppetto.core.data.model.local.LocalUser
 
LocalUserGroup - Class in org.geppetto.core.data.model.local
 
LocalUserGroup(String, List<UserPrivileges>, long, long) - Constructor for class org.geppetto.core.data.model.local.LocalUserGroup
 
LocalView - Class in org.geppetto.core.data.model.local
In case of local projects the view is handled by the client for persistence in local storage but this class can provide the initial view state if a view is present in the static local sample projects.
LocalView(long, String) - Constructor for class org.geppetto.core.data.model.local.LocalView
 
LocalViewSerializer - Class in org.geppetto.core.utilities
Creates serializer and deserializer for LocalView object and LocalGeppettoProject
LocalViewSerializer() - Constructor for class org.geppetto.core.utilities.LocalViewSerializer
 
loggedIn - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.UserPrivilegesDT
 
logger - Static variable in class org.geppetto.core.beans.PathConfiguration
 
logger - Static variable in class org.geppetto.core.data.DataManagerHelper
 
logger - Static variable in class org.geppetto.core.model.GeppettoSerializer
 
logger - Static variable in class org.geppetto.core.recordings.ConvertDATToRecording
 
logger - Static variable in class org.geppetto.core.services.DropboxUploadService
 
logger - Static variable in class org.geppetto.core.utilities.LocalViewSerializer
 
logger - Static variable in class org.geppetto.core.utilities.Zipper
 
logger - Static variable in class org.geppetto.frontend.admin.AdminServlet
 
logger - Static variable in class org.geppetto.frontend.controllers.Application
 
logger - Static variable in class org.geppetto.frontend.controllers.ConnectionHandler
 
logger - Static variable in class org.geppetto.frontend.controllers.Login
 
logger - Static variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
logger - Static variable in class org.geppetto.frontend.dashboard.service.UserResource
 
logger - Static variable in class org.geppetto.frontend.messaging.CompressionUtils
 
logger - Static variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 
logger - Static variable in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
logger - Static variable in class org.geppetto.model.neuroml.features.LEMSParametersFeature
 
logger - Static variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
logger - Static variable in class org.geppetto.model.swc.format.SWCReader
 
logger - Static variable in class org.geppetto.persistence.GeppettoDataManager
 
logger - Static variable in class org.geppetto.persistence.util.ViewSerializer
 
logger - Static variable in class org.geppetto.simulation.manager.ExperimentRunChecker
 
logger - Static variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
logger - Static variable in class org.geppetto.simulation.manager.GeppettoManager
 
logger - Static variable in class org.geppetto.simulation.manager.RuntimeExperiment
 
logger - Static variable in class org.geppetto.simulation.manager.RuntimeProject
 
logger - Static variable in class org.geppetto.simulation.utilities.GeppettoProjectZipper
 
logger - Static variable in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
logger - Static variable in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
logger - Static variable in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
logger - Static variable in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
logger - Static variable in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
login - Variable in class org.geppetto.core.data.model.local.LocalUser
 
login - Variable in class org.geppetto.frontend.admin.AdminErrorObject
 
login - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
login - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
Login - Class in org.geppetto.frontend.controllers
 
Login() - Constructor for class org.geppetto.frontend.controllers.Login
 
login(String, String, String, String, HttpServletResponse) - Method in class org.geppetto.frontend.controllers.Login
 
login - Variable in class org.geppetto.persistence.db.model.User
 
loginCount - Variable in class org.geppetto.core.data.model.local.LocalUser
 
loginCount - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
loginTimeStamps - Variable in class org.geppetto.persistence.db.model.User
 
logMessage - Variable in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
logMessage() - Method in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
logout(String, HttpServletResponse) - Method in class org.geppetto.frontend.controllers.Login
 
LOW_SPECTRUM - Static variable in class org.geppetto.model.neuroml.visualUtils.ModelInterpreterVisualConstants
 
LOW_SPECTRUM_COLOR_EDEFAULT - Static variable in class org.geppetto.model.values.impl.VisualGroupImpl
The default value of the 'Low Spectrum Color' attribute.
lowSpectrumColor - Variable in class org.geppetto.model.values.impl.VisualGroupImpl
The cached value of the 'Low Spectrum Color' attribute.

M

main(String[]) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
main(String[]) - Static method in class org.geppetto.persistence.util.DBTestData
 
makeGeppettoProjectPublic(long, boolean) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
makeGeppettoProjectPublic(long, boolean) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
makeGeppettoProjectPublic(long, boolean) - Method in class org.geppetto.persistence.GeppettoDataManager
 
makeProjectPublic(String, IGeppettoProject, boolean) - Method in interface org.geppetto.core.manager.IProjectManager
 
makeProjectPublic(String, long, boolean) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
makeProjectPublic(String, IGeppettoProject, boolean) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
manager - Static variable in class org.geppetto.core.manager.SharedLibraryManager
 
manager - Static variable in class org.geppetto.simulation.test.GeppettoManagerTest
 
manager - Static variable in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
manager - Static variable in class org.geppetto.simulation.test.TestZippingProject
 
map - Variable in class org.geppetto.core.recordings.GeppettoRecordingCreator
 
MappingJackson2HttpMessageConverter - Class in org.geppetto.frontend.controllers
Implementation of HttpMessageConverter that can read and write JSON using Jackson 2.0's ObjectMapper.
MappingJackson2HttpMessageConverter() - Constructor for class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
Construct a new BindingJacksonHttpMessageConverter.
markAsUnsynched(ISynchable) - Method in class org.geppetto.core.model.GeppettoModelAccess
This method will set the synched attribute for the object to false indicating that whatever version of the object exists client side it is now out of synch
matchingCriteria - Variable in class org.geppetto.model.datasources.impl.QueryImpl
The cached value of the 'Matching Criteria' containment reference list.
MathUtils - Class in org.geppetto.core.model
 
MathUtils() - Constructor for class org.geppetto.core.model.MathUtils
 
MatrixBuilder - Class in org.geppetto.core.utilities
 
MatrixBuilder() - Constructor for class org.geppetto.core.utilities.MatrixBuilder
 
maxQueueSize - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
The maximum size of a processing or transmission queue.
maxQueueSize - Variable in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
MD_TIME_SERIES - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'MD Time Series' class.
MD_TIME_SERIES - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'MD Time Series' class.
MD_TIME_SERIES__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
MD_TIME_SERIES__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Value' containment reference list feature.
MD_TIME_SERIES__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Value' containment reference list.
MD_TIME_SERIES_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'MD Time Series' class.
MD_TIME_SERIES_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'MD Time Series' class.
MDTimeSeries - Interface in org.geppetto.model.values
A representation of the model object 'MD Time Series'.
mdTimeSeriesEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
MDTimeSeriesImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'MD Time Series'.
MDTimeSeriesImpl() - Constructor for class org.geppetto.model.values.impl.MDTimeSeriesImpl
 
message - Variable in class org.geppetto.core.data.JsonRequestException
 
message - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.Error
 
message - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.BinaryMessageSender
 
message - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.TextMessageSender
 
messageSender - Variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
MessageSender - Interface in org.geppetto.frontend.messaging
 
MessageSenderEvent - Class in org.geppetto.frontend.messaging
 
MessageSenderEvent(Object, MessageSenderEvent.Type) - Constructor for class org.geppetto.frontend.messaging.MessageSenderEvent
 
MessageSenderEvent.Type - Enum in org.geppetto.frontend.messaging
 
messageSenderFactory - Variable in class org.geppetto.frontend.controllers.WebsocketConnection
 
MessageSenderListener - Interface in org.geppetto.frontend.messaging
 
messageType - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.BinaryMessageSender
 
messageType - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.TextMessageSender
 
METADATA_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Metadata Value' class.
METADATA_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Metadata Value' class.
METADATA_VALUE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
METADATA_VALUE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Metadata Value' class.
METADATA_VALUE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Metadata Value' class.
MetadataValue - Interface in org.geppetto.model.values
A representation of the model object 'Metadata Value'.
metadataValueEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
MetadataValueImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Metadata Value'.
MetadataValueImpl() - Constructor for class org.geppetto.model.values.impl.MetadataValueImpl
 
minMessageLengthForCompression - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
The minimum message size for compression.
minMessageLengthForCompression - Variable in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
model - Variable in class org.geppetto.core.simulator.ASimulator
 
MODEL_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Model Format' class.
MODEL_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Model Format' class.
MODEL_FORMAT__MODEL_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Model Format' attribute feature.
MODEL_FORMAT__MODEL_FORMAT - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Model Format' attribute.
MODEL_FORMAT_EDEFAULT - Static variable in class org.geppetto.model.impl.ModelFormatImpl
The default value of the 'Model Format' attribute.
MODEL_FORMAT_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Model Format' class.
MODEL_FORMAT_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Model Format' class.
MODEL_INTERPRETER_ID_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
The default value of the 'Model Interpreter Id' attribute.
MODEL_INTERPRETER_ID_EDEFAULT - Static variable in class org.geppetto.model.types.impl.ImportTypeImpl
The default value of the 'Model Interpreter Id' attribute.
MODEL_INTERPRETER_ID_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ImportValueImpl
The default value of the 'Model Interpreter Id' attribute.
modelFormat - Variable in class org.geppetto.model.impl.ModelFormatImpl
The cached value of the 'Model Format' attribute.
ModelFormat - Interface in org.geppetto.model
A representation of the model object 'Model Format'.
modelFormatEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
ModelFormatImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Model Format'.
ModelFormatImpl() - Constructor for class org.geppetto.model.impl.ModelFormatImpl
 
ModelFormatMapping - Enum in org.geppetto.model.neuroml.utils
 
ModelFormatMapping(String) - Constructor for enum org.geppetto.model.neuroml.utils.ModelFormatMapping
 
modelInterpreter - Variable in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
ModelInterpreterConfig - Class in org.geppetto.core.beans
Bean to store values for the model interpreter
ModelInterpreterConfig() - Constructor for class org.geppetto.core.beans.ModelInterpreterConfig
 
ModelInterpreterException - Exception in org.geppetto.core.model
 
ModelInterpreterException(String) - Constructor for exception org.geppetto.core.model.ModelInterpreterException
 
ModelInterpreterException(Throwable) - Constructor for exception org.geppetto.core.model.ModelInterpreterException
 
modelInterpreterId - Variable in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
The cached value of the 'Model Interpreter Id' attribute.
modelInterpreterId - Variable in class org.geppetto.model.types.impl.ImportTypeImpl
The cached value of the 'Model Interpreter Id' attribute.
modelInterpreterId - Variable in class org.geppetto.model.values.impl.ImportValueImpl
The cached value of the 'Model Interpreter Id' attribute.
modelInterpreterName - Variable in class org.geppetto.core.beans.ModelInterpreterConfig
 
modelInterpreters - Variable in class org.geppetto.simulation.manager.RuntimeProject
 
modelInterpreters - Variable in class org.geppetto.simulation.visitor.CreateModelInterpreterServicesVisitor
 
modelInterpreters - Variable in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
modelInterpreterTestUtils - Variable in class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
 
ModelInterpreterTestUtils - Class in org.geppetto.model.neuroml.test
 
ModelInterpreterTestUtils() - Constructor for class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
ModelInterpreterTestUtils(IModelInterpreter) - Constructor for class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
modelInterpreterTestUtils - Variable in class org.geppetto.model.neuroml.test.PerformanceTest
 
modelInterpreterTestUtils - Variable in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
ModelInterpreterUtils - Class in org.geppetto.model.neuroml.utils
 
ModelInterpreterUtils() - Constructor for class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
ModelInterpreterVisualConstants - Class in org.geppetto.model.neuroml.visualUtils
 
ModelInterpreterVisualConstants() - Constructor for class org.geppetto.model.neuroml.visualUtils.ModelInterpreterVisualConstants
 
modelPackage - Static variable in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
The cached model package.
modelPackage - Static variable in class org.geppetto.model.datasources.util.DatasourcesSwitch
The cached model package
modelPackage - Static variable in class org.geppetto.model.types.util.TypesAdapterFactory
The cached model package.
modelPackage - Static variable in class org.geppetto.model.types.util.TypesSwitch
The cached model package
modelPackage - Static variable in class org.geppetto.model.util.GeppettoAdapterFactory
The cached model package.
modelPackage - Static variable in class org.geppetto.model.util.GeppettoSwitch
The cached model package
modelPackage - Static variable in class org.geppetto.model.values.util.ValuesAdapterFactory
The cached model package.
modelPackage - Static variable in class org.geppetto.model.values.util.ValuesSwitch
The cached model package
modelPackage - Static variable in class org.geppetto.model.variables.util.VariablesAdapterFactory
The cached model package.
modelPackage - Static variable in class org.geppetto.model.variables.util.VariablesSwitch
The cached model package
modelParameters - Variable in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
modelParameters - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
modelParameters - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
modelParameters - Variable in class org.geppetto.persistence.db.model.AspectConfiguration
 
modelReferences - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
modelReferences - Variable in class org.geppetto.simulation.visitor.PopulateModelReferencesVisitor
 
modelSwitch - Variable in class org.geppetto.model.datasources.util.DatasourcesAdapterFactory
The switch that delegates to the createXXX methods.
modelSwitch - Variable in class org.geppetto.model.types.util.TypesAdapterFactory
The switch that delegates to the createXXX methods.
modelSwitch - Variable in class org.geppetto.model.util.GeppettoAdapterFactory
The switch that delegates to the createXXX methods.
modelSwitch - Variable in class org.geppetto.model.values.util.ValuesAdapterFactory
The switch that delegates to the createXXX methods.
modelSwitch - Variable in class org.geppetto.model.variables.util.VariablesAdapterFactory
The switch that delegates to the createXXX methods.
ModelTester() - Constructor for class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest.ModelTester
 
ModelUtility - Class in org.geppetto.model.util
 
ModelUtility() - Constructor for class org.geppetto.model.util.ModelUtility
 
mTest - Variable in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
myClient - Variable in class org.geppetto.simulator.remote.services.NSGSimulatorService
 

N

name - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
name - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
name - Variable in class org.geppetto.core.data.model.local.LocalUser
 
name - Variable in class org.geppetto.core.data.model.local.LocalUserGroup
 
name - Variable in class org.geppetto.frontend.admin.AdminErrorObject
 
name - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
name - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
name - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
name - Variable in class org.geppetto.frontend.tests.TestModel
 
name - Variable in class org.geppetto.frontend.tests.TestModule
 
name - Variable in enum org.geppetto.model.datasources.BooleanOperator
 
name - Variable in enum org.geppetto.model.FileFormat
 
name - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Name' attribute.
name - Variable in class org.geppetto.model.impl.NodeImpl
The cached value of the 'Name' attribute.
name - Variable in class org.geppetto.model.impl.TagImpl
The cached value of the 'Name' attribute.
name - Variable in enum org.geppetto.model.values.Connectivity
 
name - Variable in enum org.geppetto.model.values.ImageFormat
 
name - Variable in class org.geppetto.model.values.impl.ImageImpl
The cached value of the 'Name' attribute.
name - Variable in class org.geppetto.persistence.db.model.Experiment
 
name - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
name - Variable in class org.geppetto.persistence.db.model.User
 
name - Variable in class org.geppetto.persistence.db.model.UserGroup
 
NAME_EDEFAULT - Static variable in class org.geppetto.model.impl.GeppettoModelImpl
The default value of the 'Name' attribute.
NAME_EDEFAULT - Static variable in class org.geppetto.model.impl.NodeImpl
The default value of the 'Name' attribute.
NAME_EDEFAULT - Static variable in class org.geppetto.model.impl.TagImpl
The default value of the 'Name' attribute.
NAME_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ImageImpl
The default value of the 'Name' attribute.
NAND_VALUE - Static variable in enum org.geppetto.model.datasources.BooleanOperator
The 'NAND' literal value.
netpyneExternalSimulatorConfig - Variable in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
netPyNENSGSimulatorConfig - Variable in class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
 
NetPyNENSGSimulatorService - Class in org.geppetto.simulator.remote.services
Wrapper class for NetPyNE at Neuroscience Gateway
NetPyNENSGSimulatorService() - Constructor for class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
 
NetPyNENSGSimulatorServiceTest - Class in org.geppetto.simulator.external.tests
 
NetPyNENSGSimulatorServiceTest() - Constructor for class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
netpyneSimulatorConfig - Variable in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
NetPyNESimulatorService - Class in org.geppetto.simulator.external.services
Wrapper class for NetPyNE
NetPyNESimulatorService() - Constructor for class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
NetPyNESimulatorServiceTest - Class in org.geppetto.simulator.external.tests
 
NetPyNESimulatorServiceTest() - Constructor for class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
networkHelper - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
networkHelper - Variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
neuroml - Variable in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
neuroml - Variable in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
neuroml - Variable in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
neuroMLDocument - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
NeuroMLInclusions - Static variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
neuroMLModelInterpreterConfig - Variable in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
NeuroMLModelInterpreterService - Class in org.geppetto.model.neuroml.services
 
NeuroMLModelInterpreterService() - Constructor for class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
NeuroMLModelInterpreterServiceTest - Class in org.geppetto.model.neuroml.test
 
NeuroMLModelInterpreterServiceTest() - Constructor for class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
NeuroMLModelInterpreterServiceTest.ModelTester - Class in org.geppetto.model.neuroml.test
Test method for org.geppetto.model.neuroml.services.LemsMLModelInterpreterService#readModel(java.net.URL).
NeuroMLModelInterpreterUtils - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
NeuroMLModelInterpreterUtils() - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
neuronExternalSimulatorConfig - Variable in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
neuronNSGSimulatorConfig - Variable in class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
 
NeuronNSGSimulatorService - Class in org.geppetto.simulator.remote.services
Wrapper class for NEURON at Neuroscience Gateway
NeuronNSGSimulatorService() - Constructor for class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
 
NeuronNSGSimulatorServiceTest - Class in org.geppetto.simulator.external.tests
 
NeuronNSGSimulatorServiceTest() - Constructor for class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
neuronSimulatorConfig - Variable in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
NeuronSimulatorService - Class in org.geppetto.simulator.external.services
Wrapper class for NEURON
NeuronSimulatorService() - Constructor for class org.geppetto.simulator.external.services.NeuronSimulatorService
 
NeuronSimulatorServiceTest - Class in org.geppetto.simulator.external.tests
 
NeuronSimulatorServiceTest() - Constructor for class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
newAspectConfiguration(IExperiment, String, ISimulatorConfiguration) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newAspectConfiguration(IExperiment, String, ISimulatorConfiguration) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newAspectConfiguration(IExperiment, String, ISimulatorConfiguration) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newExperiment(String, String, IGeppettoProject) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newExperiment(String, String, IGeppettoProject) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newExperiment(String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IExperimentManager
Create a new experiment inside a given project
newExperiment(String, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
NewExperiment() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
newExperiment(String, String, IGeppettoProject) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newExperiment(String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
newExperimentBatch(String, long, WebsocketConnection.BatchExperiment) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
Creates new experiments in a batch
newParameter(String, String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newParameter(String, String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newParameter(String, String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newPersistedData(URL, PersistedDataType) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newPersistedData(URL, PersistedDataType) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newPersistedData(URL, PersistedDataType) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newPersistenceManagerFactory(String) - Method in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
newPersistenceManagerFactory(Map) - Method in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
newSimulationResult(String, IPersistedData, ResultsFormat) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newSimulationResult(String, IPersistedData, ResultsFormat) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newSimulationResult(String, IPersistedData, ResultsFormat) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newSimulatorConfiguration(String, String, float, float, Map<String, String>) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newSimulatorConfiguration(String, String, float, float, Map<String, String>) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newSimulatorConfiguration(String, String, float, float, Map<String, String>) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newUser(String, String, boolean, IUserGroup) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newUser(String, String, boolean, IUserGroup) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newUser(String, String, boolean, IUserGroup) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newUserGroup(String, List<UserPrivileges>, long, long) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newUserGroup(String, List<UserPrivileges>, long, long) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newUserGroup(String, List<UserPrivileges>, long, long) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newView(String, IExperiment) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newView(String, IGeppettoProject) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
newView(String, IGeppettoProject) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newView(String, IExperiment) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
newView(String, IGeppettoProject) - Method in class org.geppetto.persistence.GeppettoDataManager
 
newView(String, IExperiment) - Method in class org.geppetto.persistence.GeppettoDataManager
 
NIFTI_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'NIFTI' literal value.
nml2ModelInfo - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
NMLHEADER - Static variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
NoAccessGeppettoManagerTest - Class in org.geppetto.simulation.test
This is an integration test which checks the workkflows of the GeppettoManager.
NoAccessGeppettoManagerTest() - Constructor for class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
NODE - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Node' class.
NODE - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Node' class.
Node - Interface in org.geppetto.model
A representation of the model object 'Node'.
NODE___GET_PATH - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Get Path' operation.
NODE___GET_PATH - Static variable in interface org.geppetto.model.GeppettoPackage
The operation id for the 'Get Path' operation.
NODE__ID - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Id' attribute feature.
NODE__ID - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Id' attribute.
NODE__NAME - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Name' attribute feature.
NODE__NAME - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Name' attribute.
NODE__SYNCHED - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Synched' attribute.
NODE__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Tags' reference list feature.
NODE__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Tags' reference list.
NODE_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Node' class.
NODE_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Node' class.
nodeEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
NodeImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Node'.
NodeImpl() - Constructor for class org.geppetto.model.impl.NodeImpl
 
NON_DIRECTIONAL_VALUE - Static variable in enum org.geppetto.model.values.Connectivity
The 'NON DIRECTIONAL' literal value.
NOTES - Static variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
notifyListeners(MessageSenderEvent.Type) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
NSGExternalSimulatorConfig - Variable in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
NSGSimulatorService - Class in org.geppetto.simulator.remote.services
Wrapper class for NEURON at Neuroscience Gateway
NSGSimulatorService() - Constructor for class org.geppetto.simulator.remote.services.NSGSimulatorService
 
NSGUtilities - Class in org.geppetto.simulator.remote.services
Utility class for services.
NSGUtilities() - Constructor for class org.geppetto.simulator.remote.services.NSGUtilities
 
numberOfRecordings - Variable in class org.geppetto.model.nwb.ReadNWBFile
 
numberProcessors - Variable in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
numberProcessors - Variable in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
nwbDataExtractionTest() - Method in class org.geppetto.model.nwb.test.ReadNWBDataTest
 
nwbFile - Variable in class org.geppetto.model.nwb.NWBModelInterpreterService
 
nwbFile - Variable in class org.geppetto.model.nwb.test.ReadNWBDataTest
 
nwbModelInterpreter - Static variable in class org.geppetto.model.nwb.test.NWBModelInterpreterTest
 
nwbModelInterpreterConfig - Variable in class org.geppetto.model.nwb.NWBModelInterpreterService
 
NWBModelInterpreterService - Class in org.geppetto.model.nwb
 
NWBModelInterpreterService() - Constructor for class org.geppetto.model.nwb.NWBModelInterpreterService
 
NWBModelInterpreterTest - Class in org.geppetto.model.nwb.test
 
NWBModelInterpreterTest() - Constructor for class org.geppetto.model.nwb.test.NWBModelInterpreterTest
 
nwbModelType - Variable in class org.geppetto.model.nwb.ReadNWBFile
 
nwbModelType - Variable in class org.geppetto.model.nwb.test.ReadNWBDataTest
 

O

obj - Variable in class org.geppetto.model.values.impl.OBJImpl
The cached value of the 'Obj' attribute.
OBJ - Interface in org.geppetto.model.values
A representation of the model object 'OBJ'.
OBJ - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'OBJ' class.
OBJ - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'OBJ' class.
OBJ__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Group Elements' reference list.
OBJ__OBJ - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Obj' attribute feature.
OBJ__OBJ - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Obj' attribute.
OBJ__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
OBJ__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
OBJ_EDEFAULT - Static variable in class org.geppetto.model.values.impl.OBJImpl
The default value of the 'Obj' attribute.
OBJ_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'OBJ' class.
OBJ_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'OBJ' class.
objEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
objectMapper - Variable in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
OBJImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'OBJ'.
OBJImpl() - Constructor for class org.geppetto.model.values.impl.OBJImpl
 
ObjModelInterpreterService - Class in org.geppetto.core.model.services
 
ObjModelInterpreterService() - Constructor for class org.geppetto.core.model.services.ObjModelInterpreterService
 
onApplicationEvent(ContextRefreshedEvent) - Method in class org.geppetto.core.services.registry.ApplicationListenerBean
 
onApplicationEvent(ContextRefreshedEvent) - Method in class org.geppetto.frontend.ApplicationListenerBean
 
onBinaryMessage(ByteBuffer) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
onClose(int) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
oneTimeSetUp() - Method in class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
 
oneTimeSetUp() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
oneTimeSetUp() - Method in class org.geppetto.model.neuroml.test.PerformanceTest
 
oneTimeSetUp() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
onOpen(WsOutbound) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
onTextMessage(CharBuffer) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
Receives message(s) from client.
openExperiment(String, IExperiment) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
openNWBFile(H5File) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
openRecording() - Method in class org.geppetto.core.simulator.RecordingReader
 
OptimizedLEMSReader - Class in org.geppetto.model.neuroml.utils
This class should not exist inside Geppetto and should be replaced when a proper library capable of reading a NeuroML and Lems file exists.
OptimizedLEMSReader(List<URL>) - Constructor for class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
OptimizedLEMSReaderTest - Class in org.geppetto.model.neuroml.test
 
OptimizedLEMSReaderTest() - Constructor for class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
options - Variable in class org.geppetto.core.model.EMapGeppettoSerializer
 
options - Variable in class org.geppetto.core.model.SynchableSerializer
 
OR_VALUE - Static variable in enum org.geppetto.model.datasources.BooleanOperator
The 'OR' literal value.
org.geppetto.core - package org.geppetto.core
 
org.geppetto.core.auth - package org.geppetto.core.auth
 
org.geppetto.core.beans - package org.geppetto.core.beans
 
org.geppetto.core.common - package org.geppetto.core.common
 
org.geppetto.core.conversion - package org.geppetto.core.conversion
 
org.geppetto.core.data - package org.geppetto.core.data
 
org.geppetto.core.data.model - package org.geppetto.core.data.model
 
org.geppetto.core.data.model.local - package org.geppetto.core.data.model.local
 
org.geppetto.core.datasources - package org.geppetto.core.datasources
 
org.geppetto.core.externalprocesses - package org.geppetto.core.externalprocesses
 
org.geppetto.core.features - package org.geppetto.core.features
 
org.geppetto.core.manager - package org.geppetto.core.manager
 
org.geppetto.core.model - package org.geppetto.core.model
 
org.geppetto.core.model.services - package org.geppetto.core.model.services
 
org.geppetto.core.recordings - package org.geppetto.core.recordings
 
org.geppetto.core.s3 - package org.geppetto.core.s3
 
org.geppetto.core.services - package org.geppetto.core.services
 
org.geppetto.core.services.registry - package org.geppetto.core.services.registry
 
org.geppetto.core.simulation - package org.geppetto.core.simulation
 
org.geppetto.core.simulator - package org.geppetto.core.simulator
 
org.geppetto.core.utilities - package org.geppetto.core.utilities
 
org.geppetto.frontend - package org.geppetto.frontend
 
org.geppetto.frontend.admin - package org.geppetto.frontend.admin
 
org.geppetto.frontend.controllers - package org.geppetto.frontend.controllers
 
org.geppetto.frontend.dashboard.service - package org.geppetto.frontend.dashboard.service
 
org.geppetto.frontend.messages - package org.geppetto.frontend.messages
 
org.geppetto.frontend.messaging - package org.geppetto.frontend.messaging
 
org.geppetto.frontend.tests - package org.geppetto.frontend.tests
 
org.geppetto.model - package org.geppetto.model
 
org.geppetto.model.datasources - package org.geppetto.model.datasources
 
org.geppetto.model.datasources.impl - package org.geppetto.model.datasources.impl
 
org.geppetto.model.datasources.util - package org.geppetto.model.datasources.util
 
org.geppetto.model.impl - package org.geppetto.model.impl
 
org.geppetto.model.neuroml - package org.geppetto.model.neuroml
 
org.geppetto.model.neuroml.features - package org.geppetto.model.neuroml.features
 
org.geppetto.model.neuroml.modelInterpreterUtils - package org.geppetto.model.neuroml.modelInterpreterUtils
 
org.geppetto.model.neuroml.services - package org.geppetto.model.neuroml.services
 
org.geppetto.model.neuroml.summaryUtils - package org.geppetto.model.neuroml.summaryUtils
 
org.geppetto.model.neuroml.test - package org.geppetto.model.neuroml.test
 
org.geppetto.model.neuroml.utils - package org.geppetto.model.neuroml.utils
 
org.geppetto.model.neuroml.visualUtils - package org.geppetto.model.neuroml.visualUtils
 
org.geppetto.model.nwb - package org.geppetto.model.nwb
 
org.geppetto.model.nwb.test - package org.geppetto.model.nwb.test
 
org.geppetto.model.swc - package org.geppetto.model.swc
 
org.geppetto.model.swc.format - package org.geppetto.model.swc.format
 
org.geppetto.model.swc.test - package org.geppetto.model.swc.test
 
org.geppetto.model.test - package org.geppetto.model.test
 
org.geppetto.model.types - package org.geppetto.model.types
 
org.geppetto.model.types.impl - package org.geppetto.model.types.impl
 
org.geppetto.model.types.util - package org.geppetto.model.types.util
 
org.geppetto.model.util - package org.geppetto.model.util
 
org.geppetto.model.values - package org.geppetto.model.values
 
org.geppetto.model.values.impl - package org.geppetto.model.values.impl
 
org.geppetto.model.values.util - package org.geppetto.model.values.util
 
org.geppetto.model.variables - package org.geppetto.model.variables
 
org.geppetto.model.variables.impl - package org.geppetto.model.variables.impl
 
org.geppetto.model.variables.util - package org.geppetto.model.variables.util
 
org.geppetto.persistence - package org.geppetto.persistence
 
org.geppetto.persistence.auth - package org.geppetto.persistence.auth
 
org.geppetto.persistence.db - package org.geppetto.persistence.db
 
org.geppetto.persistence.db.model - package org.geppetto.persistence.db.model
 
org.geppetto.persistence.util - package org.geppetto.persistence.util
 
org.geppetto.simulation - package org.geppetto.simulation
 
org.geppetto.simulation.manager - package org.geppetto.simulation.manager
 
org.geppetto.simulation.test - package org.geppetto.simulation.test
 
org.geppetto.simulation.utilities - package org.geppetto.simulation.utilities
 
org.geppetto.simulation.visitor - package org.geppetto.simulation.visitor
 
org.geppetto.simulator.external - package org.geppetto.simulator.external
 
org.geppetto.simulator.external.services - package org.geppetto.simulator.external.services
 
org.geppetto.simulator.external.tests - package org.geppetto.simulator.external.tests
 
org.geppetto.simulator.remote.services - package org.geppetto.simulator.remote.services
 
originalFileName - Variable in class org.geppetto.core.simulator.AExternalProcessSimulator
 
OS - Static variable in class org.geppetto.simulator.external.services.Utilities
 
OSGiLocalPersistenceManagerFactoryBean - Class in org.geppetto.persistence.db
 
OSGiLocalPersistenceManagerFactoryBean() - Constructor for class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
OutboundMessages - Enum in org.geppetto.frontend.messages
 
OutboundMessages(String) - Constructor for enum org.geppetto.frontend.messages.OutboundMessages
 
outputFolder - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
outputFolder - Variable in class org.geppetto.core.simulator.AExternalProcessSimulator
 
outputModelFormat - Variable in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
outputModelFormats - Static variable in class org.geppetto.model.neuroml.services.LEMSConversionService
 

P

parameter - Variable in class org.geppetto.model.values.impl.VisualGroupElementImpl
The cached value of the 'Parameter' containment reference.
Parameter - Class in org.geppetto.persistence.db.model
 
Parameter(String, String) - Constructor for class org.geppetto.persistence.db.model.Parameter
 
PARAMETER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Parameter Type' class.
PARAMETER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Parameter Type' class.
PARAMETER_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
PARAMETER_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
PARAMETER_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
PARAMETER_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
PARAMETER_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
PARAMETER_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
PARAMETER_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
PARAMETER_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
PARAMETER_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
PARAMETER_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
PARAMETER_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
PARAMETER_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
PARAMETER_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
PARAMETER_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
PARAMETER_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Parameter Type' class.
PARAMETER_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Parameter Type' class.
parameters - Variable in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
parameters - Variable in class org.geppetto.model.datasources.impl.ProcessQueryImpl
The cached value of the 'Parameters' map.
parameters - Variable in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
ParameterType - Interface in org.geppetto.model.types
A representation of the model object 'Parameter Type'.
parameterTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
ParameterTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Parameter Type'.
ParameterTypeImpl() - Constructor for class org.geppetto.model.types.impl.ParameterTypeImpl
 
parent - Variable in class org.geppetto.model.swc.format.SWCPoint
 
parentPointIndex - Variable in class org.geppetto.model.swc.format.SWCPoint
 
parentProject - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
parseCellRefStringForCellNum(String) - Static method in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
parseForHyperlinks(String) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
parseId(String) - Static method in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
partialNeuroMLDocument - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
Particle - Interface in org.geppetto.model.values
A representation of the model object 'Particle'.
particles - Variable in class org.geppetto.model.values.impl.ParticlesImpl
The cached value of the 'Particles' containment reference list.
Particles - Interface in org.geppetto.model.values
A representation of the model object 'Particles'.
PARTICLES - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Particles' class.
PARTICLES - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Particles' class.
PARTICLES__PARTICLES - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Particles' containment reference list feature.
PARTICLES__PARTICLES - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Particles' containment reference list.
PARTICLES__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
PARTICLES_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Particles' class.
PARTICLES_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Particles' class.
particlesEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ParticlesImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Particles'.
ParticlesImpl() - Constructor for class org.geppetto.model.values.impl.ParticlesImpl
 
password - Variable in class org.geppetto.core.data.model.local.LocalUser
 
password - Variable in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
password - Variable in class org.geppetto.persistence.db.model.User
 
PATH - Static variable in class org.geppetto.core.s3.S3ManagerTest
 
path - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
path - Variable in class org.geppetto.model.values.impl.PointerImpl
The cached value of the 'Path' attribute.
PATH_EDEFAULT - Static variable in class org.geppetto.model.values.impl.PointerImpl
The default value of the 'Path' attribute.
PathConfiguration - Class in org.geppetto.core.beans
Bean to keep track of the output folders for Geppetto
PathConfiguration() - Constructor for class org.geppetto.core.beans.PathConfiguration
 
paths - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
PausableThreadPoolExecutor - Class in org.geppetto.frontend.messaging
 
PausableThreadPoolExecutor(int, int, long, TimeUnit, BlockingQueue<Runnable>, RejectedExecutionHandler) - Constructor for class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
pause() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
Pause queued message transmission.
pause() - Method in interface org.geppetto.frontend.messaging.MessageSender
 
paused - Variable in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
pausedCondition - Variable in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
pausedLock - Variable in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
PER_THREAD_PM - Static variable in class org.geppetto.persistence.db.DBManager
 
PerformanceTest - Class in org.geppetto.model.neuroml.test
 
PerformanceTest() - Constructor for class org.geppetto.model.neuroml.test.PerformanceTest
 
PersistedData - Class in org.geppetto.persistence.db.model
 
PersistedData(String, PersistedDataType) - Constructor for class org.geppetto.persistence.db.model.PersistedData
 
PersistedDataType - Enum in org.geppetto.core.data.model
 
PersistedDataType(String) - Constructor for enum org.geppetto.core.data.model.PersistedDataType
 
PersistedProject(long, long) - Constructor for class org.geppetto.frontend.controllers.ConnectionHandler.PersistedProject
 
PersistModelVisitor - Class in org.geppetto.simulation.visitor
 
PersistModelVisitor(Path, RuntimeProject, IGeppettoProject) - Constructor for class org.geppetto.simulation.visitor.PersistModelVisitor
 
persistProject(String, IGeppettoProject) - Method in interface org.geppetto.core.manager.IProjectManager
Saves the current project in the database.
persistProject(String, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
persistProject(String, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
PHYSICAL_QUANTITY - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Physical Quantity' class.
PHYSICAL_QUANTITY - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Physical Quantity' class.
PHYSICAL_QUANTITY__SCALING_FACTOR - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Scaling Factor' attribute.
PHYSICAL_QUANTITY__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
PHYSICAL_QUANTITY__UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Unit' containment reference feature.
PHYSICAL_QUANTITY__UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Unit' containment reference.
PHYSICAL_QUANTITY__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Value' attribute.
PHYSICAL_QUANTITY_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Physical Quantity' class.
PHYSICAL_QUANTITY_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Physical Quantity' class.
PhysicalQuantity - Interface in org.geppetto.model.values
A representation of the model object 'Physical Quantity'.
physicalQuantityEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
PhysicalQuantityImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Physical Quantity'.
PhysicalQuantityImpl() - Constructor for class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
plottableVariables - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
pmf - Static variable in class org.geppetto.persistence.db.DBManager
 
PNG_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'PNG' literal value.
point - Variable in class org.geppetto.model.values.impl.PointerImpl
The cached value of the 'Point' containment reference.
Point - Interface in org.geppetto.model.values
A representation of the model object 'Point'.
POINT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Point' class.
POINT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Point' class.
POINT__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
POINT__X - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'X' attribute feature.
POINT__X - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'X' attribute.
POINT__Y - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Y' attribute feature.
POINT__Y - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Y' attribute.
POINT__Z - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Z' attribute feature.
POINT__Z - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Z' attribute.
POINT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Point' class.
POINT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Point' class.
POINT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Point Type' class.
POINT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Point Type' class.
POINT_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
POINT_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
POINT_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
POINT_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
POINT_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
POINT_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
POINT_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
POINT_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
POINT_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
POINT_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
POINT_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
POINT_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
POINT_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
POINT_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
POINT_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Point Type' class.
POINT_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Point Type' class.
pointEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
pointer - Variable in class org.geppetto.model.impl.VariableValueImpl
The cached value of the 'Pointer' containment reference.
Pointer - Interface in org.geppetto.model.values
A representation of the model object 'Pointer'.
POINTER - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Pointer' class.
POINTER - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Pointer' class.
POINTER___GET_INSTANCE_PATH - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Get Instance Path' operation.
POINTER___GET_INSTANCE_PATH - Static variable in interface org.geppetto.model.values.ValuesPackage
The operation id for the 'Get Instance Path' operation.
POINTER__ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Elements' containment reference list feature.
POINTER__ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Elements' containment reference list.
POINTER__PATH - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Path' attribute feature.
POINTER__PATH - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Path' attribute.
POINTER__POINT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Point' containment reference feature.
POINTER__POINT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Point' containment reference.
POINTER__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
POINTER_ELEMENT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Pointer Element' class.
POINTER_ELEMENT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Pointer Element' class.
POINTER_ELEMENT__INDEX - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Index' attribute feature.
POINTER_ELEMENT__INDEX - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Index' attribute.
POINTER_ELEMENT__TYPE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Type' reference feature.
POINTER_ELEMENT__TYPE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Type' reference.
POINTER_ELEMENT__VARIABLE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Variable' reference feature.
POINTER_ELEMENT__VARIABLE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Variable' reference.
POINTER_ELEMENT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Pointer Element' class.
POINTER_ELEMENT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Pointer Element' class.
POINTER_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Pointer' class.
POINTER_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Pointer' class.
POINTER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Pointer Type' class.
POINTER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Pointer Type' class.
POINTER_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
POINTER_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
POINTER_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
POINTER_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
POINTER_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
POINTER_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
POINTER_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
POINTER_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
POINTER_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
POINTER_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
POINTER_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
POINTER_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
POINTER_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
POINTER_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
POINTER_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Pointer Type' class.
POINTER_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Pointer Type' class.
pointerEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
PointerElement - Interface in org.geppetto.model.values
A representation of the model object 'Pointer Element'.
pointerElementEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
PointerElementImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Pointer Element'.
PointerElementImpl() - Constructor for class org.geppetto.model.values.impl.PointerElementImpl
 
PointerImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Pointer'.
PointerImpl() - Constructor for class org.geppetto.model.values.impl.PointerImpl
 
PointerType - Interface in org.geppetto.model.types
A representation of the model object 'Pointer Type'.
pointerTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
PointerTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Pointer Type'.
PointerTypeImpl() - Constructor for class org.geppetto.model.types.impl.PointerTypeImpl
 
PointerUtility - Class in org.geppetto.model.util
 
PointerUtility() - Constructor for class org.geppetto.model.util.PointerUtility
 
PointerUtilityTest - Class in org.geppetto.model.test
 
PointerUtilityTest() - Constructor for class org.geppetto.model.test.PointerUtilityTest
 
PointImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Point'.
PointImpl() - Constructor for class org.geppetto.model.values.impl.PointImpl
 
points - Variable in class org.geppetto.model.swc.format.SWCModel
 
PointType - Interface in org.geppetto.model.types
A representation of the model object 'Point Type'.
pointTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
PointTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Point Type'.
PointTypeImpl() - Constructor for class org.geppetto.model.types.impl.PointTypeImpl
 
PopulateChannelDensityVisualGroups - Class in org.geppetto.model.neuroml.visualUtils
Helper class to populate visualization tree for neuroml models
PopulateChannelDensityVisualGroups(Cell, LinkedHashMap<String, List<Segment>>, Map<Integer, Variable>, GeppettoModelAccess) - Constructor for class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
PopulateContinuousProjectionTypes - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
PopulateContinuousProjectionTypes(PopulateTypes, GeppettoModelAccess, GeppettoLibrary) - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateContinuousProjectionTypes
 
PopulateElectricalProjectionTypes - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
PopulateElectricalProjectionTypes(PopulateTypes, GeppettoModelAccess, GeppettoLibrary) - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateElectricalProjectionTypes
 
PopulateModelReferencesVisitor - Class in org.geppetto.simulation.visitor
 
PopulateModelReferencesVisitor() - Constructor for class org.geppetto.simulation.visitor.PopulateModelReferencesVisitor
 
populateNewExperiment(IExperiment) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
PopulateProjectionTypes - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
PopulateProjectionTypes(PopulateTypes, GeppettoModelAccess, GeppettoLibrary) - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateProjectionTypes
 
PopulateSummaryNodesUtils - Class in org.geppetto.model.neuroml.summaryUtils
Populates the Model Tree of Aspect
PopulateSummaryNodesUtils(Map<String, List<Type>>, Type, URL, GeppettoModelAccess, NeuroMLDocument) - Constructor for class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
PopulateSummaryNodesUtilsTest - Class in org.geppetto.model.neuroml.test
 
PopulateSummaryNodesUtilsTest() - Constructor for class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
populateTypes - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
PopulateTypes - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
PopulateTypes(Map<String, Type>, GeppettoModelAccess, NeuroMLDocument, NetworkHelper) - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
populateTypes - Variable in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
position - Variable in class org.geppetto.model.values.impl.ArrayElementImpl
The cached value of the 'Position' containment reference.
position - Variable in class org.geppetto.model.values.impl.VisualValueImpl
The cached value of the 'Position' containment reference.
position - Variable in class org.geppetto.model.variables.impl.VariableImpl
The cached value of the 'Position' containment reference.
postPopulationType - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
postPopulationVariable - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
ppt - Variable in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
prefixJson - Variable in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
prePopulationType - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
prePopulationVariable - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
preprocessAndSendMessage(String, OutboundMessages, String) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
preprocessMessage(String, OutboundMessages, String) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
preprocessMessageAndEnqueue(String, OutboundMessages, String) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
Preprocessor(String, OutboundMessages, String) - Constructor for class org.geppetto.frontend.messaging.DefaultMessageSender.Preprocessor
 
preprocessorExecutor - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 
preprocessorQueue - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 
privileges - Variable in class org.geppetto.core.data.model.local.LocalUserGroup
 
privileges - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.UserPrivilegesDT
 
privileges - Variable in class org.geppetto.persistence.db.model.UserGroup
 
privileges - Static variable in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
process(ProcessQuery, DataSource, Variable, QueryResults, GeppettoModelAccess) - Method in interface org.geppetto.core.datasources.IQueryProcessor
This is an asynchronous method that will initiate processing of a query This method has the extra parameter "results" in case this query will need to output of a previously executed query in order to have all the necessary input data
PROCESS_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Process Query' class.
PROCESS_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Process Query' class.
PROCESS_QUERY___GET_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Path' operation.
PROCESS_QUERY__DESCRIPTION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Description' attribute.
PROCESS_QUERY__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
PROCESS_QUERY__MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Matching Criteria' containment reference list.
PROCESS_QUERY__NAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Name' attribute.
PROCESS_QUERY__PARAMETERS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Parameters' map feature.
PROCESS_QUERY__PARAMETERS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Parameters' map.
PROCESS_QUERY__QUERY_PROCESSOR_ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Processor Id' attribute feature.
PROCESS_QUERY__QUERY_PROCESSOR_ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Query Processor Id' attribute.
PROCESS_QUERY__RETURN_TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Return Type' reference.
PROCESS_QUERY__RUN_FOR_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Run For Count' attribute.
PROCESS_QUERY__SYNCHED - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Synched' attribute.
PROCESS_QUERY__TAGS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Tags' reference list.
PROCESS_QUERY_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Process Query' class.
PROCESS_QUERY_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Process Query' class.
processAddedFilesAndZip() - Method in class org.geppetto.core.utilities.Zipper
 
processDone(String[]) - Method in interface org.geppetto.core.simulation.IExternalSimulatorCallbackListener
 
processDone(String[]) - Method in class org.geppetto.simulator.external.services.AExternalProcessNeuronalSimulator
 
processDone(String[]) - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
processDone() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
processFailed(String, Exception) - Method in interface org.geppetto.core.simulation.IExternalSimulatorCallbackListener
 
processFailed(String, Exception) - Method in class org.geppetto.simulator.external.services.AExternalProcessNeuronalSimulator
 
processFailed(String, Exception) - Method in class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
 
processFailed(String, Exception) - Method in class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
 
processLEMSInclusions(String, String) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
processLocalGeppettoFile() - Method in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
processLocalGeppettoFile() - Method in class org.geppetto.simulation.visitor.PersistModelVisitor
 
ProcessQuery - Interface in org.geppetto.model.datasources
A representation of the model object 'Process Query'.
processQueryEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
ProcessQueryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Process Query'.
ProcessQueryImpl() - Constructor for class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
processTemplate(String, Map<String, Object>) - Static method in class org.geppetto.core.datasources.VelocityUtils
 
procOutputError - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
procOutputMain - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
project - Variable in class org.geppetto.frontend.admin.AdminErrorObject
 
project - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
project - Variable in class org.geppetto.persistence.db.model.Experiment
 
project - Variable in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
project - Variable in class org.geppetto.simulation.visitor.PersistModelVisitor
 
PROJECT_ID_EDEFAULT - Static variable in class org.geppetto.model.impl.ExperimentStateImpl
The default value of the 'Project Id' attribute.
projectId - Variable in class org.geppetto.core.services.AService
 
projectID - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.PersistedProject
 
projectId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.BatchExperiment
 
projectId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
projectId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GetScript
 
projectId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
projectId - Variable in class org.geppetto.model.impl.ExperimentStateImpl
The cached value of the 'Project Id' attribute.
projectId - Variable in class org.geppetto.simulation.visitor.CreateModelInterpreterServicesVisitor
 
projections - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
projectionType - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
projects - Variable in class org.geppetto.core.data.DefaultGeppettoDataManager
 
projects - Variable in class org.geppetto.core.data.FindLocalProjectsVisitor
 
projects - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
projects - Variable in class org.geppetto.persistence.GeppettoDataManager
 
projects - Variable in class org.geppetto.simulation.manager.GeppettoManager
 
projectsRunning - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
properties - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
purgeLostConnections() - Method in class org.geppetto.frontend.controllers.ConnectionsManager
 

Q

Quantity - Interface in org.geppetto.model.values
A representation of the model object 'Quantity'.
QUANTITY - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Quantity' class.
QUANTITY - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Quantity' class.
QUANTITY__SCALING_FACTOR - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Scaling Factor' attribute feature.
QUANTITY__SCALING_FACTOR - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Scaling Factor' attribute.
QUANTITY__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
QUANTITY__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Value' attribute feature.
QUANTITY__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Value' attribute.
QUANTITY_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Quantity' class.
QUANTITY_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Quantity' class.
QUANTITY_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Quantity Type' class.
QUANTITY_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Quantity Type' class.
QUANTITY_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
QUANTITY_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
QUANTITY_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
QUANTITY_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
QUANTITY_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
QUANTITY_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
QUANTITY_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
QUANTITY_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
QUANTITY_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
QUANTITY_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
QUANTITY_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
QUANTITY_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
QUANTITY_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
QUANTITY_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
QUANTITY_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Quantity Type' class.
QUANTITY_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Quantity Type' class.
quantityEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
QuantityImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Quantity'.
QuantityImpl() - Constructor for class org.geppetto.model.values.impl.QuantityImpl
 
QuantityType - Interface in org.geppetto.model.types
A representation of the model object 'Quantity Type'.
quantityTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
QuantityTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Quantity Type'.
QuantityTypeImpl() - Constructor for class org.geppetto.model.types.impl.QuantityTypeImpl
 
queries - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Queries' containment reference list.
queries - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Queries' containment reference list.
QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query' class.
QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Query' class.
query - Variable in class org.geppetto.model.datasources.impl.SimpleQueryImpl
The cached value of the 'Query' attribute.
Query - Interface in org.geppetto.model.datasources
A representation of the model object 'Query'.
QUERY___GET_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Path' operation.
QUERY__DESCRIPTION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Description' attribute feature.
QUERY__DESCRIPTION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Description' attribute.
QUERY__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
QUERY__MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Matching Criteria' containment reference list feature.
QUERY__MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Matching Criteria' containment reference list.
QUERY__NAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Name' attribute.
QUERY__RETURN_TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Return Type' reference feature.
QUERY__RETURN_TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Return Type' reference.
QUERY__RUN_FOR_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Run For Count' attribute feature.
QUERY__RUN_FOR_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Run For Count' attribute.
QUERY__SYNCHED - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Synched' attribute.
QUERY__TAGS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Tags' reference list.
QUERY_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.SimpleQueryImpl
The default value of the 'Query' attribute.
QUERY_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Query' class.
QUERY_MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Matching Criteria' class.
QUERY_MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Query Matching Criteria' class.
QUERY_MATCHING_CRITERIA__TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Type' reference list feature.
QUERY_MATCHING_CRITERIA__TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Type' reference list.
QUERY_MATCHING_CRITERIA_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Query Matching Criteria' class.
QUERY_MATCHING_CRITERIA_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Query Matching Criteria' class.
QUERY_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Query' class.
QUERY_PATH_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.RunnableQueryImpl
The default value of the 'Query Path' attribute.
QUERY_PROCESSOR_ID_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.ProcessQueryImpl
The default value of the 'Query Processor Id' attribute.
QUERY_RESULT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Result' class.
QUERY_RESULT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Query Result' class.
QUERY_RESULT__VALUES - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Values' attribute list feature.
QUERY_RESULT__VALUES - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Values' attribute list.
QUERY_RESULT_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Query Result' class.
QUERY_RESULT_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Query Result' class.
QUERY_RESULTS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Results' class.
QUERY_RESULTS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Query Results' class.
QUERY_RESULTS___GET_VALUE__STRING_INT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Get Value' operation.
QUERY_RESULTS___GET_VALUE__STRING_INT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Value' operation.
QUERY_RESULTS__HEADER - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Header' attribute list feature.
QUERY_RESULTS__HEADER - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Header' attribute list.
QUERY_RESULTS__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Id' attribute feature.
QUERY_RESULTS__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
QUERY_RESULTS__RESULTS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Results' containment reference list feature.
QUERY_RESULTS__RESULTS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Results' containment reference list.
QUERY_RESULTS_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Query Results' class.
QUERY_RESULTS_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Query Results' class.
queryChain - Variable in class org.geppetto.model.datasources.impl.CompoundQueryImpl
The cached value of the 'Query Chain' containment reference list.
queryChain - Variable in class org.geppetto.model.datasources.impl.CompoundRefQueryImpl
The cached value of the 'Query Chain' reference list.
QueryChecker - Class in org.geppetto.core.datasources
 
QueryChecker() - Constructor for class org.geppetto.core.datasources.QueryChecker
 
queryEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
QueryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Query'.
QueryImpl() - Constructor for class org.geppetto.model.datasources.impl.QueryImpl
 
QueryMatchingCriteria - Interface in org.geppetto.model.datasources
A representation of the model object 'Query Matching Criteria'.
queryMatchingCriteriaEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
QueryMatchingCriteriaImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Query Matching Criteria'.
QueryMatchingCriteriaImpl() - Constructor for class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
 
queryPath - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.RunnableQueryDT
 
queryPath - Variable in class org.geppetto.model.datasources.impl.RunnableQueryImpl
The cached value of the 'Query Path' attribute.
queryProcessorId - Variable in class org.geppetto.model.datasources.impl.ProcessQueryImpl
The cached value of the 'Query Processor Id' attribute.
QueryResult - Interface in org.geppetto.model.datasources
A representation of the model object 'Query Result'.
queryResultEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
QueryResultImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Query Result'.
QueryResultImpl() - Constructor for class org.geppetto.model.datasources.impl.QueryResultImpl
 
QueryResults - Interface in org.geppetto.model.datasources
A representation of the model object 'Query Results'.
queryResultsEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
QueryResultsImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Query Results'.
QueryResultsImpl() - Constructor for class org.geppetto.model.datasources.impl.QueryResultsImpl
 
queue - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
queuedExperiments - Variable in class org.geppetto.simulation.manager.ExperimentRunChecker
 
queuedMessageTypes - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
Message types that should be queued - and thus handled across multiple threads.
queuedMessageTypes - Variable in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
queueExperiment(IUser, IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
queuingEnabled - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
If true then use worker threads for processing and transmission.
queuingEnabled - Variable in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 

R

radius - Variable in class org.geppetto.model.swc.format.SWCPoint
 
radius - Variable in class org.geppetto.model.values.impl.SphereImpl
The cached value of the 'Radius' attribute.
RADIUS_EDEFAULT - Static variable in class org.geppetto.model.values.impl.SphereImpl
The default value of the 'Radius' attribute.
radiusMap - Variable in class org.geppetto.model.neuroml.features.CanvasCustomisation
 
randomGenerator - Static variable in class org.geppetto.core.model.MathUtils
 
rawResultsPath - Static variable in class org.geppetto.core.beans.PathConfiguration
 
read(String, String[], ExperimentState) - Method in class org.geppetto.core.recordings.ConvertDATToRecording
Reads DAT file and extract's values.
read(URL, String) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
readAllFormats(URL) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
readAllFormats(URL, Long) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
reader - Variable in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
reader - Variable in class org.geppetto.model.nwb.NWBModelInterpreterService
 
reader - Variable in class org.geppetto.model.nwb.test.ReadNWBDataTest
 
readGeppettoModel(URL) - Static method in class org.geppetto.core.model.GeppettoModelReader
 
readHDF5File(URL, long) - Static method in class org.geppetto.core.common.HDF5Reader
 
readHDF5File() - Method in class org.geppetto.core.TestHDFBindings
 
readInternal(Class<?>, HttpInputMessage) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
readModel(String, String, IModelInterpreter, GeppettoLibrary, GeppettoModel) - Method in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
readModel(String, String, IModelInterpreter) - Method in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
readModel(String, String) - Method in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
ReadNWBDataTest - Class in org.geppetto.model.nwb.test
 
ReadNWBDataTest() - Constructor for class org.geppetto.model.nwb.test.ReadNWBDataTest
 
ReadNWBFile - Class in org.geppetto.model.nwb
 
ReadNWBFile() - Constructor for class org.geppetto.model.nwb.ReadNWBFile
 
readNWBFile(H5File, String) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
readParticlesVariable(String, H5File, ExperimentState, boolean) - Method in class org.geppetto.core.simulator.RecordingReader
 
readRecording(String, ExperimentState, boolean) - Method in class org.geppetto.core.simulator.RecordingReader
 
readSingleDataField(H5File, String) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
readString(InputStream) - Static method in class org.geppetto.core.common.GeppettoCommonUtils
 
readStringFromURL(URL) - Static method in class org.geppetto.core.utilities.URLReader
 
readSWCFile(URL) - Method in class org.geppetto.model.swc.format.SWCReader
 
readSWCModel(String) - Method in class org.geppetto.model.swc.format.SWCReader
 
readVariable(String, H5File, ExperimentState, boolean) - Method in class org.geppetto.core.simulator.RecordingReader
 
ReadWriteTest - Class in org.geppetto.model.test
 
ReadWriteTest() - Constructor for class org.geppetto.model.test.ReadWriteTest
 
ReceivedObject() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
recordedVariables - Variable in class org.geppetto.model.impl.ExperimentStateImpl
The cached value of the 'Recorded Variables' containment reference list.
Recording - Class in org.geppetto.core.model
 
Recording(H5File) - Constructor for class org.geppetto.core.model.Recording
 
recording - Variable in class org.geppetto.core.simulator.RecordingReader
 
recordingCreator - Variable in class org.geppetto.core.recordings.ConvertDATToRecording
 
recordingFormat - Variable in class org.geppetto.core.simulator.RecordingReader
 
RecordingObject - Class in org.geppetto.core.recordings
Object class that holds together valus for a variable yet to be created inside an HDF5 file.
RecordingObject() - Constructor for class org.geppetto.core.recordings.RecordingObject
 
recordingOpened - Variable in class org.geppetto.core.simulator.RecordingReader
 
RecordingReader - Class in org.geppetto.core.simulator
 
RecordingReader(Recording) - Constructor for class org.geppetto.core.simulator.RecordingReader
 
RecordingReader(Recording, ResultsFormat) - Constructor for class org.geppetto.core.simulator.RecordingReader
 
recordingsH5File - Variable in class org.geppetto.core.recordings.GeppettoRecordingCreator
 
reference - Variable in class org.geppetto.model.values.impl.ImageImpl
The cached value of the 'Reference' attribute.
REFERENCE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ImageImpl
The default value of the 'Reference' attribute.
REFERENCE_URL_EDEFAULT - Static variable in class org.geppetto.model.types.impl.ImportTypeImpl
The default value of the 'Reference URL' attribute.
referencedVariables - Variable in class org.geppetto.model.types.impl.TypeImpl
The cached value of the 'Referenced Variables' reference list.
referenceURL - Variable in class org.geppetto.model.types.impl.ImportTypeImpl
The cached value of the 'Reference URL' attribute.
registerConversionService(IConversion, List<ModelFormat>, List<ModelFormat>) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
registeredConversionServices - Static variable in class org.geppetto.core.services.registry.ServicesRegistry
 
registeredModelFormats - Static variable in class org.geppetto.core.services.registry.ServicesRegistry
 
registeredModelInterpreterServices - Static variable in class org.geppetto.core.services.registry.ServicesRegistry
 
registeredQueryProcessorServices - Static variable in class org.geppetto.core.services.registry.ServicesRegistry
 
registeredSimulatorServices - Static variable in class org.geppetto.core.services.registry.ServicesRegistry
 
registerGeppettoService() - Method in class org.geppetto.core.model.services.ColladaModelInterpreterService
 
registerGeppettoService() - Method in class org.geppetto.core.model.services.ObjModelInterpreterService
 
registerGeppettoService() - Method in interface org.geppetto.core.services.IService
 
registerGeppettoService() - Method in class org.geppetto.core.TestConversion
 
registerGeppettoService() - Method in class org.geppetto.core.TestConversion2
 
registerGeppettoService() - Method in class org.geppetto.core.TestModelInterpreter
 
registerGeppettoService() - Method in class org.geppetto.core.TestModelInterpreter2
 
registerGeppettoService() - Method in class org.geppetto.core.TestSimulator
 
registerGeppettoService() - Method in class org.geppetto.core.TestSimulator2
 
registerGeppettoService() - Method in class org.geppetto.model.neuroml.services.LEMSConversionService
 
registerGeppettoService() - Method in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
registerGeppettoService() - Method in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
registerGeppettoService() - Method in class org.geppetto.model.nwb.NWBModelInterpreterService
 
registerGeppettoService() - Method in class org.geppetto.model.swc.SWCModelInterpreterService
 
registerGeppettoService() - Method in class org.geppetto.simulation.test.TestModelInterpreterService
 
registerGeppettoService() - Method in class org.geppetto.simulation.test.TestSimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
 
registerGeppettoService() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
registerModelFormat(String) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
registerModelInterpreterService(IModelInterpreter, List<ModelFormat>) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
registerQueryProcessorService(IQueryProcessor) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
registerSimulatorService(ISimulator, List<ModelFormat>) - Static method in class org.geppetto.core.services.registry.ServicesRegistry
 
release() - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
release() - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
release() - Method in class org.geppetto.simulation.manager.RuntimeProject
 
reloaded - Variable in class org.geppetto.core.recordings.GeppettoRecordingCreator
 
RemoteSimulatorConfig - Class in org.geppetto.core.simulator
 
RemoteSimulatorConfig() - Constructor for class org.geppetto.core.simulator.RemoteSimulatorConfig
 
removeConnection(WebsocketConnection) - Method in class org.geppetto.frontend.controllers.ConnectionsManager
Remove connection from list of current ones.
removeListener(MessageSenderListener) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
removeListener(MessageSenderListener) - Method in interface org.geppetto.frontend.messaging.MessageSender
 
removeType(EObject) - Method in class org.geppetto.core.model.GeppettoModelAccess
 
replaceMap - Variable in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
replaceMap - Variable in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
replaceMap - Variable in class org.geppetto.simulation.visitor.PersistModelVisitor
 
replaceToken(String, String, String, int) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
replaceURLs(Path, Map<String, String>) - Method in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
This method replaces in the localFile all the occurrences of the old URLs with the new ones
replaceURLs(Path, Map<String, String>) - Method in class org.geppetto.simulation.visitor.GeppettoModelVisitor
This method replaces in the localFile all the occurrences of the old URLs with the new ones
replaceURLs(Path, Map<String, String>) - Method in class org.geppetto.simulation.visitor.PersistModelVisitor
This method replaces in the localFile all the occurrences of the old URLs with the new ones
reqId - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
requestID - Variable in class org.geppetto.frontend.messages.GeppettoTransportMessage
 
requestId - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.Preprocessor
 
reset() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
reset() - Method in interface org.geppetto.frontend.messaging.MessageSender
 
resetRecordingIndex() - Method in class org.geppetto.core.simulator.RecordingReader
 
resolve() - Method in class org.geppetto.model.swc.format.SWCModel
this method resolves parent indexes to actual SWCPoint objects
resolveImportType(List<String>, IGeppettoProject) - Method in interface org.geppetto.core.manager.IRuntimeTreeManager
 
resolveImportType(String, Long, List<String>) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
resolveImportType(List<String>, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
resolveImportType(List<String>) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
resolveImportValue(String, IExperiment, IGeppettoProject) - Method in interface org.geppetto.core.manager.IRuntimeTreeManager
 
resolveImportValue(String, Long, Long, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
resolveImportValue(String, IExperiment, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
resolveImportValue(String) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
resolveProjectionImportType(Component, ImportType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
resolveProjectionImportType(Component, ImportType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateContinuousProjectionTypes
 
resolveProjectionImportType(Component, ImportType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateElectricalProjectionTypes
 
resolveProjectionImportType(Component, ImportType) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateProjectionTypes
 
resolveType(String, GeppettoLibrary) - Method in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
Resources - Enum in org.geppetto.frontend
 
Resources(String) - Constructor for enum org.geppetto.frontend.Resources
 
Resources - Enum in org.geppetto.model.neuroml.utils
Class to hold resources used in the visualiser.
Resources(String, String) - Constructor for enum org.geppetto.model.neuroml.utils.Resources
 
ResourcesDomainType - Enum in org.geppetto.model.neuroml.utils
Class to hold resources used in the visualiser.
ResourcesDomainType(String, String) - Constructor for enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
ResourcesSummary - Enum in org.geppetto.model.neuroml.summaryUtils
Class to hold resources used in the visualiser.
ResourcesSummary(String, String) - Constructor for enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
 
result - Variable in class org.geppetto.core.data.model.local.LocalSimulationResult
 
result - Variable in class org.geppetto.persistence.db.model.SimulationResult
 
results - Variable in class org.geppetto.model.datasources.impl.QueryResultsImpl
The cached value of the 'Results' containment reference list.
resultsDir - Static variable in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
resultsDir - Static variable in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
resultsDir - Static variable in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
resultsDir - Static variable in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
resultsDir - Static variable in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
ResultsFormat - Enum in org.geppetto.core.data.model
 
ResultsFormat(String) - Constructor for enum org.geppetto.core.data.model.ResultsFormat
 
resume() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
resume() - Method in interface org.geppetto.frontend.messaging.MessageSender
 
retrieveExperiment(long, IGeppettoProject) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
retrieveGeppettoProject(long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
retrievePathsFromS3(String) - Method in class org.geppetto.core.s3.S3Manager
Return the object pointers to the files that are stored at the paths starting with a given prefix.
returnType - Variable in class org.geppetto.model.datasources.impl.QueryImpl
The cached value of the 'Return Type' reference.
revertToInitialConditions() - Method in class org.geppetto.simulation.manager.SimulatorRuntime
Revert the simulator to the initial conditions
root(HttpServletRequest, HttpServletResponse) - Method in class org.geppetto.frontend.controllers.Application
 
run - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
run() - Method in class org.geppetto.core.externalprocesses.ExternalProcess
 
run() - Method in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
run() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender.BinaryMessageSender
 
run() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender.Preprocessor
 
run() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender.TextMessageSender
 
run() - Method in class org.geppetto.simulation.manager.ExperimentRunChecker
 
run() - Method in class org.geppetto.simulation.manager.ExperimentRunThread
 
run() - Method in class org.geppetto.simulation.manager.SimulatorRunThread
 
RUN_FOR_COUNT_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.QueryImpl
The default value of the 'Run For Count' attribute.
runExperiment(String, IExperiment) - Method in interface org.geppetto.core.manager.IExperimentManager
Run a specified experiment
runExperiment(String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
Run the Experiment
runExperiment(IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
runExperiment(String, IExperiment) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
runExternalProcess(String[], String, String) - Method in class org.geppetto.core.simulator.AExternalProcessSimulator
 
runForCount - Variable in class org.geppetto.model.datasources.impl.QueryImpl
The cached value of the 'Run For Count' attribute.
RUNNABLE_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Runnable Query' class.
RUNNABLE_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Runnable Query' class.
RUNNABLE_QUERY__BOOLEAN_OPERATOR - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Boolean Operator' attribute feature.
RUNNABLE_QUERY__BOOLEAN_OPERATOR - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Boolean Operator' attribute.
RUNNABLE_QUERY__QUERY_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query Path' attribute feature.
RUNNABLE_QUERY__QUERY_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Query Path' attribute.
RUNNABLE_QUERY__TARGET_VARIABLE_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Target Variable Path' attribute feature.
RUNNABLE_QUERY__TARGET_VARIABLE_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Target Variable Path' attribute.
RUNNABLE_QUERY_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Runnable Query' class.
RUNNABLE_QUERY_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Runnable Query' class.
runnableQueries - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
RunnableQuery - Interface in org.geppetto.model.datasources
A representation of the model object 'Runnable Query'.
RunnableQueryDT() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection.RunnableQueryDT
 
runnableQueryEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
RunnableQueryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Runnable Query'.
RunnableQueryImpl() - Constructor for class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
runQuery(List<RunnableQuery>, IGeppettoProject) - Method in interface org.geppetto.core.manager.IDataSourceManager
 
runQuery(String, Long, List<RunnableQuery>) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
runQuery(List<RunnableQuery>, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
runQuery(List<RunnableQuery>) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
runQueryCount(List<RunnableQuery>, IGeppettoProject) - Method in interface org.geppetto.core.manager.IDataSourceManager
 
runQueryCount(String, Long, List<RunnableQuery>) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
runQueryCount(List<RunnableQuery>, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
runQueryCount(List<RunnableQuery>) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
runtime - Variable in class org.geppetto.core.simulator.ASimulator
 
RuntimeExperiment - Class in org.geppetto.simulation.manager
 
RuntimeExperiment(RuntimeProject, IExperiment) - Constructor for class org.geppetto.simulation.manager.RuntimeExperiment
 
runtimeProject - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
runtimeProject - Variable in class org.geppetto.simulation.manager.RuntimeExperiment
 
RuntimeProject - Class in org.geppetto.simulation.manager
The Runtime project holds the runtime state for an open project.
RuntimeProject(IGeppettoProject, IGeppettoManager) - Constructor for class org.geppetto.simulation.manager.RuntimeProject
 
runtimeProject - Static variable in class org.geppetto.simulation.test.GeppettoManagerTest
 
runtimeProject - Static variable in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
runtimeProject - Variable in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
runtimeProject - Variable in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
runtimeProject - Variable in class org.geppetto.simulation.visitor.PersistModelVisitor
 

S

s3BucketName - Static variable in class org.geppetto.core.beans.PathConfiguration
 
S3Manager - Class in org.geppetto.core.s3
 
S3Manager() - Constructor for class org.geppetto.core.s3.S3Manager
 
S3ManagerTest - Class in org.geppetto.core.s3
 
S3ManagerTest() - Constructor for class org.geppetto.core.s3.S3ManagerTest
 
samePoint(Point3DWithDiam, Point3DWithDiam) - Method in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
samePoint(SWCPoint) - Method in class org.geppetto.model.swc.format.SWCPoint
 
saveEntity(Object) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
saveEntity(IExperiment) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
saveEntity(IGeppettoProject) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
saveEntity(Object) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
saveEntity(IExperiment) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
saveEntity(IGeppettoProject) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
saveEntity(Object) - Method in class org.geppetto.persistence.GeppettoDataManager
 
saveEntity(IGeppettoProject) - Method in class org.geppetto.persistence.GeppettoDataManager
 
saveEntity(IExperiment) - Method in class org.geppetto.persistence.GeppettoDataManager
 
saveExperimentProperties(String, long, long, Map<String, String>) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
saveFileToS3(File, String) - Method in interface org.geppetto.core.data.IGeppettoS3Manager
 
saveFileToS3(File, String) - Method in class org.geppetto.core.s3.S3Manager
Save a file to S3.
saveProjectProperties(String, long, Map<String, String>) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
saveTextToS3(String, String) - Method in interface org.geppetto.core.data.IGeppettoS3Manager
 
saveTextToS3(String, String) - Method in class org.geppetto.core.s3.S3Manager
Save a text to S3.
scale(float, float, float) - Static method in class org.geppetto.core.model.MathUtils
 
SCALING_FACTOR_EDEFAULT - Static variable in class org.geppetto.model.values.impl.QuantityImpl
The default value of the 'Scaling Factor' attribute.
SCALING_FACTOR_EDEFAULT - Static variable in class org.geppetto.model.values.impl.TimeSeriesImpl
The default value of the 'Scaling Factor' attribute.
scalingFactor - Variable in class org.geppetto.model.values.impl.QuantityImpl
The cached value of the 'Scaling Factor' attribute.
scalingFactor - Variable in class org.geppetto.model.values.impl.TimeSeriesImpl
The cached value of the 'Scaling Factor' attribute.
Scope - Enum in org.geppetto.core.manager
Defines the scope of a GeppettoManager
Scope() - Constructor for enum org.geppetto.core.manager.Scope
 
scope - Variable in class org.geppetto.core.services.AService
 
scope - Variable in class org.geppetto.simulation.manager.GeppettoManager
 
scope - Variable in class org.geppetto.simulation.visitor.CreateModelInterpreterServicesVisitor
 
scope - Variable in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
script - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
script - Variable in class org.geppetto.persistence.db.model.Experiment
 
scriptURL - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GetScript
 
segmentGeometries - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
segmentGroupSegMap - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
segmentGroupSegMap - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
segmentIdsvisualObjectsSegments - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
segmentsMap - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
sendBinaryMessage(String, Path) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
sendBinaryMessage(byte[], OutboundMessages, int, boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
sendDataSourceResults(String, String, URL, WebsocketConnection) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
senderExecutor - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 
senderQueue - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 
sendFile(Path) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
sendFile(Path) - Method in interface org.geppetto.frontend.messaging.MessageSender
 
sendJob(CiClient, long, Path, int, boolean) - Static method in class org.geppetto.simulator.remote.services.NSGUtilities
 
sendMessage(String, OutboundMessages, String) - Method in class org.geppetto.frontend.controllers.WebsocketConnection
 
sendMessage(String, OutboundMessages, String) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
sendMessage(String, OutboundMessages, String) - Method in interface org.geppetto.frontend.messaging.MessageSender
 
sendScriptData(String, Long, String, WebsocketConnection) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
sendTextMessage(String, OutboundMessages) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
serialise(String, String, IModelInterpreter) - Method in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
serialise(String, String) - Method in class org.geppetto.model.neuroml.test.ModelInterpreterTestUtils
 
SERIALIZABLE_QUERY_RESULT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Serializable Query Result' class.
SERIALIZABLE_QUERY_RESULT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Serializable Query Result' class.
SERIALIZABLE_QUERY_RESULT__VALUES - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Values' attribute list feature.
SERIALIZABLE_QUERY_RESULT__VALUES - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Values' attribute list.
SERIALIZABLE_QUERY_RESULT_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Serializable Query Result' class.
SERIALIZABLE_QUERY_RESULT_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Serializable Query Result' class.
SerializableQueryResult - Interface in org.geppetto.model.datasources
A representation of the model object 'Serializable Query Result'.
serializableQueryResultEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
SerializableQueryResultImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Serializable Query Result'.
SerializableQueryResultImpl() - Constructor for class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
serialize(Map.Entry, JsonGenerator, SerializerProvider) - Method in class org.geppetto.core.model.EMapGeppettoSerializer
 
serialize(EClass, JsonGenerator, SerializerProvider) - Method in class org.geppetto.core.model.GeppettoSerializer.GeppettoCustomTypeSerializer
 
serialize(EObject, JsonGenerator, SerializerProvider) - Method in class org.geppetto.core.model.SynchableSerializer
 
serialize(IView, Type, JsonSerializationContext) - Method in class org.geppetto.core.utilities.LocalViewSerializer
 
serialize(IView, Type, JsonSerializationContext) - Method in class org.geppetto.persistence.util.ViewSerializer
 
serializeToJSON(EObject, boolean) - Static method in class org.geppetto.core.model.GeppettoSerializer
 
serializeToJSON(EObject) - Static method in class org.geppetto.core.model.GeppettoSerializer
 
serialVersionUID - Static variable in exception org.geppetto.core.common.GeppettoAccessException
 
serialVersionUID - Static variable in exception org.geppetto.core.common.GeppettoExecutionException
 
serialVersionUID - Static variable in exception org.geppetto.core.common.GeppettoInitializationException
 
serialVersionUID - Static variable in exception org.geppetto.core.conversion.ConversionException
 
serialVersionUID - Static variable in class org.geppetto.core.data.model.local.LocalUserGroup
 
serialVersionUID - Static variable in class org.geppetto.core.data.model.local.LocalView
 
serialVersionUID - Static variable in exception org.geppetto.core.datasources.GeppettoDataSourceException
 
serialVersionUID - Static variable in exception org.geppetto.core.model.ModelInterpreterException
 
serialVersionUID - Static variable in class org.geppetto.frontend.controllers.GeppettoServlet
 
serialVersionUID - Static variable in exception org.geppetto.model.swc.format.SWCException
 
serialVersionUID - Static variable in exception org.geppetto.model.util.GeppettoModelException
 
serialVersionUID - Static variable in exception org.geppetto.model.util.GeppettoVisitingException
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.Experiment
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.GeppettoProject
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.Parameter
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.PersistedData
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.SimulationResult
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.User
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.UserGroup
 
serialVersionUID - Static variable in class org.geppetto.persistence.db.model.View
 
serialVersionUID - Static variable in exception org.geppetto.simulation.manager.ViewProcessor.JsonObjectExtensionConflictException
 
SERVER_ROOT_TOKEN - Static variable in class org.geppetto.core.utilities.URLReader
 
serverBehaviorMode - Variable in class org.geppetto.frontend.controllers.SimulationServerConfig
 
ServerBehaviorModes() - Constructor for enum org.geppetto.frontend.controllers.SimulationServerConfig.ServerBehaviorModes
 
ServiceCreator - Class in org.geppetto.core.services
This class creates a service using the application context.
ServiceCreator() - Constructor for class org.geppetto.core.services.ServiceCreator
 
ServiceRegistryTest - Class in org.geppetto.core
 
ServiceRegistryTest() - Constructor for class org.geppetto.core.ServiceRegistryTest
 
ServicesRegistry - Class in org.geppetto.core.services.registry
 
ServicesRegistry() - Constructor for class org.geppetto.core.services.registry.ServicesRegistry
 
ServicesRegistry.ConversionServiceKey - Class in org.geppetto.core.services.registry
 
setA(Pointer) - Method in interface org.geppetto.model.values.Connection
Sets the value of the 'A' containment reference.
setA(Pointer) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
setAbstract(boolean) - Method in class org.geppetto.model.types.impl.TypeImpl
 
setAbstract(boolean) - Method in interface org.geppetto.model.types.Type
Sets the value of the 'Abstract' attribute.
setActiveExperiment(IExperiment) - Method in class org.geppetto.simulation.manager.RuntimeProject
 
setActiveExperimentId(long) - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
setActiveExperimentId(long) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
setActiveExperimentId(long) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setArgument(String) - Method in interface org.geppetto.model.values.Argument
Sets the value of the 'Argument' attribute.
setArgument(String) - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
setArrayType(Type) - Method in interface org.geppetto.model.types.ArrayType
Sets the value of the 'Array Type' reference.
setArrayType(Type) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
setAspectConfigurations(List<AspectConfiguration>) - Method in class org.geppetto.persistence.db.model.Experiment
 
setAutoresolve(boolean) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
setAutoresolve(boolean) - Method in interface org.geppetto.model.types.ImportType
Sets the value of the 'Autoresolve' attribute.
setB(Pointer) - Method in interface org.geppetto.model.values.Connection
Sets the value of the 'B' containment reference.
setB(Pointer) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
setBaseURL(String) - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
setBaseURL(String) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
setBaseURL(String) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setBooleanOperator(BooleanOperator) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
setBooleanOperator(BooleanOperator) - Method in interface org.geppetto.model.datasources.RunnableQuery
Sets the value of the 'Boolean Operator' attribute.
setBottomRadius(double) - Method in interface org.geppetto.model.values.Cylinder
Sets the value of the 'Bottom Radius' attribute.
setBottomRadius(double) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
setBundleContext(BundleContext) - Method in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
setClassLoader(MethodInvocationProceedingJoinPoint) - Method in class org.geppetto.persistence.db.BundleClassLoaderAspect
 
setCollada(String) - Method in interface org.geppetto.model.values.Collada
Sets the value of the 'Collada' attribute.
setCollada(String) - Method in class org.geppetto.model.values.impl.ColladaImpl
 
setCompressionEnabled(boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
setCompressionEnabled(boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
setConnectionProject(IGeppettoProject) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
setConnectivity(Connectivity) - Method in interface org.geppetto.model.values.Connection
Sets the value of the 'Connectivity' attribute.
setConnectivity(Connectivity) - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
setConversionServiceId(String) - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
setConversionServiceId(String) - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
setConversionServiceId(String) - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
setConvertModel(boolean) - Method in class org.geppetto.core.conversion.AConversion
 
setCountQuery(String) - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
setCountQuery(String) - Method in interface org.geppetto.model.datasources.SimpleQuery
Sets the value of the 'Count Query' attribute.
setCreationDate(Date) - Method in class org.geppetto.persistence.db.model.Experiment
 
setData(String) - Method in interface org.geppetto.model.values.Image
Sets the value of the 'Data' attribute.
setData(String) - Method in class org.geppetto.model.values.impl.ImageImpl
 
setDataBytes(int) - Method in class org.geppetto.core.recordings.RecordingObject
 
setDataManager(IGeppettoDataManager) - Static method in class org.geppetto.core.data.DataManagerHelper
Deprecated.
This method is to be used by tests only
setDataSourceService(String) - Method in interface org.geppetto.model.datasources.DataSource
Sets the value of the 'Data Source Service' attribute.
setDataSourceService(String) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
setDataType(int) - Method in class org.geppetto.core.recordings.RecordingObject
 
setDbManager(DBManager) - Method in class org.geppetto.persistence.GeppettoDataManager
 
setDefaultColor(String) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
setDefaultColor(String) - Method in interface org.geppetto.model.values.VisualGroupElement
Sets the value of the 'Default Color' attribute.
setDefaultValue(Argument) - Method in interface org.geppetto.model.types.ArgumentType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(ArrayValue) - Method in interface org.geppetto.model.types.ArrayType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Composite) - Method in interface org.geppetto.model.types.CompositeType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Composite) - Method in interface org.geppetto.model.types.ConnectionType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Dynamics) - Method in interface org.geppetto.model.types.DynamicsType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Expression) - Method in interface org.geppetto.model.types.ExpressionType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(HTML) - Method in interface org.geppetto.model.types.HTMLType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Image) - Method in interface org.geppetto.model.types.ImageType
Sets the value of the 'Default Value' reference.
setDefaultValue(Argument) - Method in class org.geppetto.model.types.impl.ArgumentTypeImpl
 
setDefaultValue(ArrayValue) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
setDefaultValue(Composite) - Method in class org.geppetto.model.types.impl.CompositeTypeImpl
 
setDefaultValue(Composite) - Method in class org.geppetto.model.types.impl.ConnectionTypeImpl
 
setDefaultValue(Dynamics) - Method in class org.geppetto.model.types.impl.DynamicsTypeImpl
 
setDefaultValue(Expression) - Method in class org.geppetto.model.types.impl.ExpressionTypeImpl
 
setDefaultValue(HTML) - Method in class org.geppetto.model.types.impl.HTMLTypeImpl
 
setDefaultValue(Image) - Method in class org.geppetto.model.types.impl.ImageTypeImpl
 
setDefaultValue(Quantity) - Method in class org.geppetto.model.types.impl.ParameterTypeImpl
 
setDefaultValue(Pointer) - Method in class org.geppetto.model.types.impl.PointerTypeImpl
 
setDefaultValue(Point) - Method in class org.geppetto.model.types.impl.PointTypeImpl
 
setDefaultValue(Quantity) - Method in class org.geppetto.model.types.impl.QuantityTypeImpl
 
setDefaultValue(Quantity) - Method in class org.geppetto.model.types.impl.StateVariableTypeImpl
 
setDefaultValue(Text) - Method in class org.geppetto.model.types.impl.TextTypeImpl
 
setDefaultValue(URL) - Method in class org.geppetto.model.types.impl.URLTypeImpl
 
setDefaultValue(VisualValue) - Method in class org.geppetto.model.types.impl.VisualTypeImpl
 
setDefaultValue(Quantity) - Method in interface org.geppetto.model.types.ParameterType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Pointer) - Method in interface org.geppetto.model.types.PointerType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Point) - Method in interface org.geppetto.model.types.PointType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Quantity) - Method in interface org.geppetto.model.types.QuantityType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Quantity) - Method in interface org.geppetto.model.types.StateVariableType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(Text) - Method in interface org.geppetto.model.types.TextType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(URL) - Method in interface org.geppetto.model.types.URLType
Sets the value of the 'Default Value' containment reference.
setDefaultValue(VisualValue) - Method in interface org.geppetto.model.types.VisualType
Sets the value of the 'Default Value' containment reference.
setDescription(String) - Method in interface org.geppetto.core.data.model.IExperiment
 
setDescription(String) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setDescription(String) - Method in class org.geppetto.frontend.tests.TestModule
 
setDescription(String) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
setDescription(String) - Method in interface org.geppetto.model.datasources.Query
Sets the value of the 'Description' attribute.
setDescription(String) - Method in class org.geppetto.persistence.db.model.Experiment
 
setDetails(String) - Method in interface org.geppetto.core.data.model.IExperiment
 
setDetails(String) - Method in class org.geppetto.core.data.model.local.LocalExperiment
Operation not supported on local experiment
setDetails(String) - Method in class org.geppetto.persistence.db.model.Experiment
 
setDiscardMessagesIfQueueFull(boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
setDiscardMessagesIfQueueFull(boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
setDistal(Point) - Method in interface org.geppetto.model.values.Cylinder
Sets the value of the 'Distal' containment reference.
setDistal(Point) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
setDomainModel(Object) - Method in interface org.geppetto.model.DomainModel
Sets the value of the 'Domain Model' attribute.
setDomainModel(Object) - Method in class org.geppetto.model.impl.DomainModelImpl
 
setDomainModel(DomainModel) - Method in class org.geppetto.model.types.impl.TypeImpl
 
setDomainModel(DomainModel) - Method in interface org.geppetto.model.types.Type
Sets the value of the 'Domain Model' reference.
setDropboxToken(String) - Method in interface org.geppetto.core.data.model.IUser
 
setDropboxToken(String) - Method in class org.geppetto.core.data.model.local.LocalUser
 
setDropboxToken(String) - Method in class org.geppetto.persistence.db.model.User
 
setDynamics(Function) - Method in interface org.geppetto.model.values.Dynamics
Sets the value of the 'Dynamics' containment reference.
setDynamics(Function) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
setEndDate(Date) - Method in class org.geppetto.persistence.db.model.Experiment
 
setError(String) - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
setError(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setExperiment(IExperiment) - Method in class org.geppetto.core.conversion.AConversion
 
setExperiment(IExperiment) - Method in class org.geppetto.core.simulator.ASimulator
 
setExperiment(String) - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
setExperiment(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setExperimentId(long) - Method in interface org.geppetto.model.ExperimentState
Sets the value of the 'Experiment Id' attribute.
setExperimentId(long) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
setExperimentLastRun(long) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setExperimentListener(IGeppettoManagerCallbackListener) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
setExperiments(int) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setExperiments(List<Experiment>) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setExperimentView(String, IExperiment, IGeppettoProject) - Method in interface org.geppetto.core.manager.IExperimentManager
 
setExperimentView(String, String, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
setExperimentView(String, IExperiment, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
setExpression(String) - Method in interface org.geppetto.model.values.Expression
Sets the value of the 'Expression' attribute.
setExpression(Expression) - Method in interface org.geppetto.model.values.Function
Sets the value of the 'Expression' containment reference.
setExpression(String) - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
setExpression(Expression) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
setFeatures(List<TestFeatures>) - Method in class org.geppetto.frontend.tests.TestModel
 
setFetchVariableQuery(Query) - Method in interface org.geppetto.model.datasources.DataSource
Sets the value of the 'Fetch Variable Query' containment reference.
setFetchVariableQuery(Query) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
setFileFormat(FileFormat) - Method in interface org.geppetto.model.ExternalDomainModel
Sets the value of the 'File Format' attribute.
setFileFormat(FileFormat) - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
setFinalValue(double) - Method in interface org.geppetto.model.values.FunctionPlot
Sets the value of the 'Final Value' attribute.
setFinalValue(double) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
setForceResolve(boolean) - Method in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
setFormat(String) - Method in interface org.geppetto.model.datasources.DataSourceLibraryConfiguration
Sets the value of the 'Format' attribute.
setFormat(String) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
setFormat(ModelFormat) - Method in interface org.geppetto.model.DomainModel
Sets the value of the 'Format' containment reference.
setFormat(ModelFormat) - Method in class org.geppetto.model.impl.DomainModelImpl
 
setFormat(ImageFormat) - Method in interface org.geppetto.model.values.Image
Sets the value of the 'Format' attribute.
setFormat(ImageFormat) - Method in class org.geppetto.model.values.impl.ImageImpl
 
setFraction(float) - Method in interface org.geppetto.model.values.VisualPointer
Sets the value of the 'Fraction' attribute.
setFraction(float) - Method in interface org.geppetto.model.values.VisualReference
Sets the value of the 'Fraction' attribute.
setFunctionPlot(FunctionPlot) - Method in interface org.geppetto.model.values.Function
Sets the value of the 'Function Plot' containment reference.
setFunctionPlot(FunctionPlot) - Method in class org.geppetto.model.values.impl.FunctionImpl
 
setGeppettoModel(PersistedData) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setGeppettoProjects(List<GeppettoProject>) - Method in class org.geppetto.persistence.db.model.User
 
setHash(int) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
setHash(int) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
setHash(int) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
setHeight(double) - Method in interface org.geppetto.model.values.Cylinder
Sets the value of the 'Height' attribute.
setHeight(double) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
setHighSpectrumColor(String) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
setHighSpectrumColor(String) - Method in interface org.geppetto.model.values.VisualGroup
Sets the value of the 'High Spectrum Color' attribute.
setHtml(String) - Method in interface org.geppetto.model.values.HTML
Sets the value of the 'Html' attribute.
setHtml(String) - Method in class org.geppetto.model.values.impl.HTMLImpl
 
setId(long) - Method in interface org.geppetto.core.data.model.IDataEntity
 
setId(long) - Method in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
setId(long) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setId(long) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
setId(long) - Method in class org.geppetto.core.data.model.local.LocalPersistedData
 
setId(long) - Method in class org.geppetto.core.data.model.local.LocalSimulationResult
 
setId(long) - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
setId(String) - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
setId(String) - Method in interface org.geppetto.model.datasources.QueryResults
Sets the value of the 'Id' attribute.
setId(String) - Method in interface org.geppetto.model.GeppettoModel
Sets the value of the 'Id' attribute.
setId(String) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
setId(String) - Method in class org.geppetto.model.impl.NodeImpl
 
setId(String) - Method in interface org.geppetto.model.Node
Sets the value of the 'Id' attribute.
setId(long) - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
setId(long) - Method in class org.geppetto.persistence.db.model.Experiment
 
setId(long) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setId(long) - Method in class org.geppetto.persistence.db.model.PersistedData
 
setId(long) - Method in class org.geppetto.persistence.db.model.SimulationResult
 
setId(long) - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
setIndex(int) - Method in class org.geppetto.model.swc.format.SWCPoint
 
setIndex(int) - Method in interface org.geppetto.model.values.ArrayElement
Sets the value of the 'Index' attribute.
setIndex(int) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
setIndex(Integer) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
setIndex(Integer) - Method in interface org.geppetto.model.values.PointerElement
Sets the value of the 'Index' attribute.
setInitialCondition(PhysicalQuantity) - Method in interface org.geppetto.model.values.Dynamics
Sets the value of the 'Initial Condition' containment reference.
setInitialCondition(PhysicalQuantity) - Method in class org.geppetto.model.values.impl.DynamicsImpl
 
setInitialized(boolean) - Method in class org.geppetto.core.simulator.ASimulator
 
setInitialized(boolean) - Method in interface org.geppetto.core.simulator.ISimulator
 
setInitialized(boolean) - Method in class org.geppetto.core.TestSimulator
 
setInitialized(boolean) - Method in class org.geppetto.core.TestSimulator2
 
setInitialValue(Value) - Method in interface org.geppetto.model.values.ArrayElement
Sets the value of the 'Initial Value' containment reference.
setInitialValue(double) - Method in interface org.geppetto.model.values.FunctionPlot
Sets the value of the 'Initial Value' attribute.
setInitialValue(Value) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
setInitialValue(double) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
setInstance(String) - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
setIsPublic(boolean) - Method in class org.geppetto.persistence.db.model.Experiment
 
setIsSimulationLoaded(boolean) - Method in class org.geppetto.frontend.controllers.SimulationServerConfig
Keeps track if simulation server has model loaded
setJNeuroMLExternalSimulatorConfig(ExternalSimulatorConfig) - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setJNeuroMLSimulatorConfig(SimulatorConfig) - Method in class org.geppetto.simulator.external.services.JNeuroMLSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setKey(String) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
setKey(String) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
setKey(Type) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
setLastLogin(String) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setLastModified(Date) - Method in class org.geppetto.persistence.db.model.Experiment
 
setLEMSExternalSimulatorConfig(ExternalSimulatorConfig) - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setLEMSSimulatorConfig(SimulatorConfig) - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setLength(float) - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
setLength(float) - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
setLength(float) - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
setLibrary(GeppettoLibrary) - Method in interface org.geppetto.model.datasources.DataSourceLibraryConfiguration
Sets the value of the 'Library' reference.
setLibrary(GeppettoLibrary) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
setListener(ISimulatorCallbackListener) - Method in class org.geppetto.core.simulator.ASimulator
 
setLoadedScene(String) - Method in class org.geppetto.frontend.controllers.SimulationServerConfig
Stores the current simulation loaded as JSON string.
setLogin(String) - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
setLogin(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setLogin(String) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setLogin(String) - Method in class org.geppetto.persistence.db.model.User
 
setLoginCount(int) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setLowSpectrumColor(String) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
setLowSpectrumColor(String) - Method in interface org.geppetto.model.values.VisualGroup
Sets the value of the 'Low Spectrum Color' attribute.
setMaxBufferSize(int) - Method in class org.geppetto.simulation.AppConfig
 
setMaxQueueSize(int) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
setMaxQueueSize(int) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
setMetaType(String) - Method in class org.geppetto.core.recordings.RecordingObject
 
setMinMessageLengthForCompression(int) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
setMinMessageLengthForCompression(int) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
setModelFormat(String) - Method in class org.geppetto.model.impl.ModelFormatImpl
 
setModelFormat(String) - Method in interface org.geppetto.model.ModelFormat
Sets the value of the 'Model Format' attribute.
setModelInterpreterId(String) - Method in interface org.geppetto.model.datasources.DataSourceLibraryConfiguration
Sets the value of the 'Model Interpreter Id' attribute.
setModelInterpreterId(String) - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
setModelInterpreterId(String) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
setModelInterpreterId(String) - Method in interface org.geppetto.model.types.ImportType
Sets the value of the 'Model Interpreter Id' attribute.
setModelInterpreterId(String) - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
setModelInterpreterId(String) - Method in interface org.geppetto.model.values.ImportValue
Sets the value of the 'Model Interpreter Id' attribute.
setModelInterpreterName(String) - Method in class org.geppetto.core.beans.ModelInterpreterConfig
 
setModelParameter(List<Parameter>) - Method in class org.geppetto.persistence.db.model.AspectConfiguration
 
setModelParameters(Map<String, String>, IExperiment, IGeppettoProject) - Method in interface org.geppetto.core.manager.IRuntimeTreeManager
Changes the parameters of the model
setModelParameters(Map<String, String>, IExperiment, IGeppettoProject) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
setModelParameters(List<? extends IParameter>) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
setModelParameters(Map<String, String>) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
setName(String) - Method in interface org.geppetto.core.data.model.IExperiment
 
setName(String) - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
setName(String) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setName(String) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
setName(String) - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
setName(String) - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
setName(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setName(String) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setName(String) - Method in class org.geppetto.frontend.tests.TestModel
 
setName(String) - Method in class org.geppetto.frontend.tests.TestModule
 
setName(String) - Method in interface org.geppetto.model.GeppettoModel
Sets the value of the 'Name' attribute.
setName(String) - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
setName(String) - Method in class org.geppetto.model.impl.NodeImpl
 
setName(String) - Method in class org.geppetto.model.impl.TagImpl
 
setName(String) - Method in interface org.geppetto.model.Node
Sets the value of the 'Name' attribute.
setName(String) - Method in interface org.geppetto.model.Tag
Sets the value of the 'Name' attribute.
setName(String) - Method in interface org.geppetto.model.values.Image
Sets the value of the 'Name' attribute.
setName(String) - Method in class org.geppetto.model.values.impl.ImageImpl
 
setName(String) - Method in class org.geppetto.persistence.db.model.Experiment
 
setName(String) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setName(String) - Method in class org.geppetto.persistence.db.model.User
 
setName(String) - Method in class org.geppetto.persistence.db.model.UserGroup
 
setNetPyNEExternalSimulatorConfig(ExternalSimulatorConfig) - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setNetPyNESimulatorConfig(SimulatorConfig) - Method in class org.geppetto.simulator.external.services.NetPyNESimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setNetPyNESimulatorConfig(SimulatorConfig) - Method in class org.geppetto.simulator.remote.services.NetPyNENSGSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setNeuronExternalSimulatorConfig(ExternalSimulatorConfig) - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setNeuronSimulatorConfig(SimulatorConfig) - Method in class org.geppetto.simulator.external.services.NeuronSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setNeuronSimulatorConfig(SimulatorConfig) - Method in class org.geppetto.simulator.remote.services.NeuronNSGSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setNSGExternalSimulatorConfig(RemoteSimulatorConfig) - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
Deprecated.
for test purposes only, the configuration is autowired
setObj(String) - Method in class org.geppetto.model.values.impl.OBJImpl
 
setObj(String) - Method in interface org.geppetto.model.values.OBJ
Sets the value of the 'Obj' attribute.
setObjectAttribute(EObject, Object, Object) - Method in class org.geppetto.core.model.GeppettoModelAccess
This method will change an attribute of an object
setObjectMapper(ObjectMapper) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
Set the ObjectMapper for this view.
setParameter(VariableValue) - Method in interface org.geppetto.core.features.ISetParameterFeature
 
setParameter(VariableValue) - Method in class org.geppetto.model.neuroml.features.LEMSParametersFeature
 
setParameter(Quantity) - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
setParameter(Quantity) - Method in interface org.geppetto.model.values.VisualGroupElement
Sets the value of the 'Parameter' containment reference.
setParameter(VariableValue) - Method in class org.geppetto.simulation.test.TestModelInterpreterService.TestSetParameterFeature
 
setParameters(Map<String, String>) - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
setParameters(Map<String, String>) - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
setParameters(String, Map<String, String>, long, long) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
setParameters - Variable in class org.geppetto.model.impl.ExperimentStateImpl
The cached value of the 'Set Parameters' containment reference list.
setParameters(CompositeType, GeppettoLibrary, GeppettoModelAccess) - Method in class org.geppetto.model.nwb.ReadNWBFile
 
setParameters(Map<String, String>) - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
setParent(SWCPoint) - Method in class org.geppetto.model.swc.format.SWCPoint
 
setParentProject(IGeppettoProject) - Method in interface org.geppetto.core.data.model.IExperiment
 
setParentProject(IGeppettoProject) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setParentProject(IGeppettoProject) - Method in class org.geppetto.persistence.db.model.Experiment
 
setPassword(String) - Method in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
setPassword(String, String, String) - Method in class org.geppetto.frontend.dashboard.service.UserResource
 
setPassword(String) - Method in class org.geppetto.persistence.db.model.User
 
setPath(String) - Method in class org.geppetto.model.values.impl.PointerImpl
 
setPath(String) - Method in interface org.geppetto.model.values.Pointer
Sets the value of the 'Path' attribute.
setPaused(boolean) - Method in class org.geppetto.frontend.messaging.PausableThreadPoolExecutor
 
setPersistenceManagerFactory(PersistenceManagerFactory) - Method in class org.geppetto.persistence.db.DBManager
 
setPoint(Point) - Method in class org.geppetto.model.values.impl.PointerImpl
 
setPoint(Point) - Method in interface org.geppetto.model.values.Pointer
Sets the value of the 'Point' containment reference.
setPointer(Pointer) - Method in class org.geppetto.model.impl.VariableValueImpl
 
setPointer(Pointer) - Method in interface org.geppetto.model.VariableValue
Sets the value of the 'Pointer' containment reference.
setPosition(double, double, double) - Method in class org.geppetto.model.swc.format.SWCPoint
 
setPosition(Point) - Method in interface org.geppetto.model.values.ArrayElement
Sets the value of the 'Position' containment reference.
setPosition(Point) - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
setPosition(Point) - Method in class org.geppetto.model.values.impl.VisualValueImpl
 
setPosition(Point) - Method in interface org.geppetto.model.values.VisualValue
Sets the value of the 'Position' containment reference.
setPosition(Point) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
setPosition(Point) - Method in interface org.geppetto.model.variables.Variable
Sets the value of the 'Position' containment reference.
setPrefixJson(boolean) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
Indicate whether the JSON output by this view should be prefixed with "{} &&".
setPrivileges(List<UserPrivileges>) - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
setPrivileges(List<UserPrivileges>) - Method in class org.geppetto.persistence.db.model.UserGroup
 
setProcessedSteps(int) - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
setProject(String) - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
setProject(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setProjectId(long) - Method in class org.geppetto.core.services.AService
 
setProjectId(long) - Method in interface org.geppetto.model.ExperimentState
Sets the value of the 'Project Id' attribute.
setProjectId(long) - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
setProjects(int) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setPublic(boolean) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
setPublic(boolean) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setQuery(String) - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
setQuery(String) - Method in interface org.geppetto.model.datasources.SimpleQuery
Sets the value of the 'Query' attribute.
setQueryPath(String) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
setQueryPath(String) - Method in interface org.geppetto.model.datasources.RunnableQuery
Sets the value of the 'Query Path' attribute.
setQueryProcessorId(String) - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
setQueryProcessorId(String) - Method in interface org.geppetto.model.datasources.ProcessQuery
Sets the value of the 'Query Processor Id' attribute.
setQueuedMessageTypes(Set<OutboundMessages>) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
setQueuedMessageTypes(Set<OutboundMessages>) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
setQueuingEnabled(boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
setQueuingEnabled(boolean) - Method in class org.geppetto.frontend.messaging.DefaultMessageSenderFactory
 
setRadius(double) - Method in class org.geppetto.model.swc.format.SWCPoint
 
setRadius(double) - Method in class org.geppetto.model.values.impl.SphereImpl
 
setRadius(double) - Method in interface org.geppetto.model.values.Sphere
Sets the value of the 'Radius' attribute.
setRecordingFormat(ResultsFormat) - Method in class org.geppetto.core.simulator.RecordingReader
 
setReference(String) - Method in interface org.geppetto.model.values.Image
Sets the value of the 'Reference' attribute.
setReference(String) - Method in class org.geppetto.model.values.impl.ImageImpl
 
setReferenceURL(String) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
setReferenceURL(String) - Method in interface org.geppetto.model.types.ImportType
Sets the value of the 'Reference URL' attribute.
setResult(PersistedData) - Method in class org.geppetto.persistence.db.model.SimulationResult
 
setReturnType(Type) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
setReturnType(Type) - Method in interface org.geppetto.model.datasources.Query
Sets the value of the 'Return Type' reference.
setRunForCount(boolean) - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
setRunForCount(boolean) - Method in interface org.geppetto.model.datasources.Query
Sets the value of the 'Run For Count' attribute.
setScalingFactor(int) - Method in class org.geppetto.model.values.impl.QuantityImpl
 
setScalingFactor(int) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
setScalingFactor(int) - Method in interface org.geppetto.model.values.Quantity
Sets the value of the 'Scaling Factor' attribute.
setScalingFactor(int) - Method in interface org.geppetto.model.values.TimeSeries
Sets the value of the 'Scaling Factor' attribute.
setScope(Scope) - Method in class org.geppetto.core.services.AService
 
setScript(String) - Method in interface org.geppetto.core.data.model.IExperiment
 
setScript(String) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setScript(String) - Method in class org.geppetto.persistence.db.model.Experiment
 
setServerBehaviorMode(SimulationServerConfig.ServerBehaviorModes) - Method in class org.geppetto.frontend.controllers.SimulationServerConfig
Keeps track of current behavior of simulation server
setSimulatedInstance(String) - Method in class org.geppetto.persistence.db.model.SimulationResult
 
setSimulationCapacity(int) - Method in class org.geppetto.simulation.AppConfig
 
setSimulationListener(IGeppettoManagerCallbackListener) - Method in interface org.geppetto.core.manager.IGeppettoManager
 
setSimulationListener(IGeppettoManagerCallbackListener) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
setSimulationResults(List<SimulationResult>) - Method in class org.geppetto.persistence.db.model.Experiment
 
setSimulationTimeAllowance(long) - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
setSimulationTimeAllowance(long) - Method in class org.geppetto.persistence.db.model.UserGroup
 
setSimulator(String) - Method in class org.geppetto.frontend.admin.AdminErrorObject
 
setSimulator(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setSimulatorID(String) - Method in class org.geppetto.core.beans.SimulatorConfig
 
setSimulatorId(String) - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
setSimulatorId(String) - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
setSimulatorId(String) - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
setSimulatorName(String) - Method in class org.geppetto.core.beans.SimulatorConfig
 
setSimulatorParameters(Map<String, String>) - Method in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
setSimulatorPath(String) - Method in class org.geppetto.core.simulator.ExternalSimulatorConfig
 
setSize(int) - Method in interface org.geppetto.model.types.ArrayType
Sets the value of the 'Size' attribute.
setSize(int) - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
setSpaceAllowance(long) - Method in class org.geppetto.core.data.model.local.LocalUserGroup
 
setSpaceAllowance(long) - Method in class org.geppetto.persistence.db.model.UserGroup
 
setStartDate(Date) - Method in class org.geppetto.persistence.db.model.Experiment
 
setStatic(boolean) - Method in class org.geppetto.model.variables.impl.VariableImpl
 
setStatic(boolean) - Method in interface org.geppetto.model.variables.Variable
Sets the value of the 'Static' attribute.
setStatus(ExperimentStatus) - Method in interface org.geppetto.core.data.model.IExperiment
 
setStatus(ExperimentStatus) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setStatus(String) - Method in class org.geppetto.frontend.admin.AdminSimulationObject
 
setStatus(ExperimentStatus) - Method in class org.geppetto.persistence.db.model.Experiment
 
setStatus(SimulatorRuntimeStatus) - Method in class org.geppetto.simulation.manager.SimulatorRuntime
 
setStepValue(double) - Method in interface org.geppetto.model.values.FunctionPlot
Sets the value of the 'Step Value' attribute.
setStepValue(double) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
setStorage(String) - Method in class org.geppetto.frontend.admin.AdminUserObject
 
setSynched(boolean) - Method in class org.geppetto.model.impl.NodeImpl
 
setSynched(boolean) - Method in class org.geppetto.model.impl.TagImpl
 
setSynched(boolean) - Method in interface org.geppetto.model.ISynchable
Sets the value of the 'Synched' attribute.
setSynched(boolean) - Method in class org.geppetto.model.values.impl.ValueImpl
 
setTargetLibrary(GeppettoLibrary) - Method in interface org.geppetto.model.datasources.DataSource
Sets the value of the 'Target Library' reference.
setTargetLibrary(GeppettoLibrary) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
setTargetVariablePath(String) - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
setTargetVariablePath(String) - Method in interface org.geppetto.model.datasources.RunnableQuery
Sets the value of the 'Target Variable Path' attribute.
setTestModels(List<TestModel>) - Method in class org.geppetto.frontend.tests.TestModule
 
setTestModules(List<TestModule>) - Method in class org.geppetto.frontend.tests.Test
 
setText(String) - Method in class org.geppetto.model.values.impl.TextImpl
 
setText(String) - Method in interface org.geppetto.model.values.Text
Sets the value of the 'Text' attribute.
setTimestep(float) - Method in interface org.geppetto.core.data.model.ISimulatorConfiguration
 
setTimestep(float) - Method in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
setTimestep(float) - Method in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
setTimeStepUnit(String) - Method in class org.geppetto.core.simulator.ASimulator
 
settingsFolder - Static variable in class org.geppetto.core.beans.PathConfiguration
 
setTitle(String) - Method in interface org.geppetto.model.values.FunctionPlot
Sets the value of the 'Title' attribute.
setTitle(String) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
setTopRadius(double) - Method in interface org.geppetto.model.values.Cylinder
Sets the value of the 'Top Radius' attribute.
setTopRadius(double) - Method in class org.geppetto.model.values.impl.CylinderImpl
 
setType(MessageSenderEvent.Type) - Method in class org.geppetto.frontend.messaging.MessageSenderEvent
 
setType(Type) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
setType(String) - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
setType(Type) - Method in interface org.geppetto.model.values.PointerElement
Sets the value of the 'Type' reference.
setType(String) - Method in interface org.geppetto.model.values.VisualGroup
Sets the value of the 'Type' attribute.
setType(PersistedDataType) - Method in class org.geppetto.persistence.db.model.PersistedData
 
setTypedKey(String) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
setTypedKey(String) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
setTypedKey(Type) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
setTypedValue(String) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
setTypedValue(Value) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
setTypedValue(Value) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
setUnit(String) - Method in class org.geppetto.core.recordings.RecordingObject
 
setUnit(Unit) - Method in class org.geppetto.model.values.impl.PhysicalQuantityImpl
 
setUnit(Unit) - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
setUnit(String) - Method in class org.geppetto.model.values.impl.UnitImpl
 
setUnit(Unit) - Method in interface org.geppetto.model.values.PhysicalQuantity
Sets the value of the 'Unit' containment reference.
setUnit(Unit) - Method in interface org.geppetto.model.values.TimeSeries
Sets the value of the 'Unit' containment reference.
setUnit(String) - Method in interface org.geppetto.model.values.Unit
Sets the value of the 'Unit' attribute.
setUp() - Method in class org.geppetto.core.GeppettoHTTPClientTest
 
setup() - Method in class org.geppetto.core.HDF5ReaderTest
 
setUp() - Method in class org.geppetto.core.VelocityUtilsTest
 
setUp() - Static method in class org.geppetto.model.nwb.test.NWBModelInterpreterTest
 
setup() - Method in class org.geppetto.model.nwb.test.ReadNWBDataTest
 
setUp() - Method in class org.geppetto.model.swc.test.SWCModelInterpreterTest
 
setUp() - Method in class org.geppetto.model.swc.test.SWCReaderTest
 
setUp() - Static method in class org.geppetto.model.test.PointerUtilityTest
 
setUp() - Method in class org.geppetto.model.test.ReadWriteTest
 
setUp() - Static method in class org.geppetto.simulation.test.GeppettoManagerTest
 
setUp() - Static method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
 
setUp() - Static method in class org.geppetto.simulation.test.TestZippingProject
 
setup() - Static method in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
setup() - Static method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
setup() - Static method in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
setup() - Static method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
setup() - Static method in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
setUpdateCycle(int) - Method in class org.geppetto.simulation.AppConfig
 
setURL(String) - Method in interface org.geppetto.core.data.model.IPersistedData
 
setURL(String) - Method in class org.geppetto.core.data.model.local.LocalPersistedData
 
setUrl(String) - Method in class org.geppetto.frontend.tests.TestModel
 
setUrl(String) - Method in interface org.geppetto.model.datasources.DataSource
Sets the value of the 'Url' attribute.
setUrl(String) - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
setUrl(String) - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
setUrl(String) - Method in interface org.geppetto.model.types.ImportType
Sets the value of the 'Url' attribute.
setUrl(String) - Method in class org.geppetto.model.values.impl.URLImpl
 
setUrl(String) - Method in interface org.geppetto.model.values.URL
Sets the value of the 'Url' attribute.
setURL(String) - Method in class org.geppetto.persistence.db.model.PersistedData
 
setUser(IUser) - Method in class org.geppetto.core.auth.DefaultAuthService
 
setUser(IUser) - Method in interface org.geppetto.core.auth.IAuthService
 
setUser(IUser) - Method in interface org.geppetto.core.manager.IGeppettoManager
FIXME: Move to IAuthService?
setUser(IUser) - Method in class org.geppetto.persistence.auth.GeppettoAuthentication
 
setUser(IUser) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
setUserGroup(IUserGroup) - Method in class org.geppetto.core.data.model.local.LocalUser
 
setUserGroup(UserGroup) - Method in class org.geppetto.persistence.db.model.User
 
setUsername(String) - Method in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
setValue(String) - Method in interface org.geppetto.core.data.model.IParameter
 
setValue(String) - Method in class org.geppetto.core.data.model.local.LocalParameter
 
setValue(String) - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
setValue(Value) - Method in class org.geppetto.model.impl.VariableValueImpl
 
setValue(double) - Method in class org.geppetto.model.values.impl.QuantityImpl
 
setValue(Value) - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
setValue(double) - Method in interface org.geppetto.model.values.Quantity
Sets the value of the 'Value' attribute.
setValue(Value) - Method in class org.geppetto.model.variables.impl.TypeToValueMapImpl
 
setValue(Value) - Method in interface org.geppetto.model.VariableValue
Sets the value of the 'Value' containment reference.
setValue(String) - Method in class org.geppetto.persistence.db.model.Parameter
 
setValues(Object) - Method in class org.geppetto.core.recordings.RecordingObject
 
setVariable(String) - Method in class org.geppetto.core.recordings.RecordingObject
 
setVariable(Variable) - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
setVariable(Variable) - Method in interface org.geppetto.model.values.PointerElement
Sets the value of the 'Variable' reference.
setVariable(String) - Method in class org.geppetto.persistence.db.model.Parameter
 
setView(IView) - Method in interface org.geppetto.core.data.model.IExperiment
 
setView(IView) - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
setView(String) - Method in interface org.geppetto.core.data.model.IView
 
setView(IView) - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
setView(IView) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
Operation not supported on local experiment
setView(String) - Method in class org.geppetto.core.data.model.local.LocalView
 
setView(IView) - Method in class org.geppetto.persistence.db.model.Experiment
 
setView(IView) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setView(String) - Method in class org.geppetto.persistence.db.model.View
 
setVisualType(VisualType) - Method in class org.geppetto.model.types.impl.TypeImpl
 
setVisualType(VisualType) - Method in interface org.geppetto.model.types.Type
Sets the value of the 'Visual Type' reference.
setVisualVariable(Variable) - Method in interface org.geppetto.model.values.VisualPointer
Sets the value of the 'Visual Variable' reference.
setVisualVariable(Variable) - Method in interface org.geppetto.model.values.VisualReference
Sets the value of the 'Visual Variable' reference.
setVolatile(boolean) - Method in interface org.geppetto.core.data.model.IGeppettoProject
 
setVolatile(boolean) - Method in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
setVolatile(boolean) - Method in class org.geppetto.persistence.db.model.GeppettoProject
 
setWatchedVariables(List<String>, IExperiment, IGeppettoProject, boolean) - Method in interface org.geppetto.core.manager.IRuntimeTreeManager
Sets variables to be watched
setWatchedVariables(String, List<String>, long, long, boolean) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
Adds watch lists with variables to be watched
setWatchedVariables(List<String>, IExperiment, IGeppettoProject, boolean) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
setWatchedVariables(List<String>, boolean) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
setX(double) - Method in class org.geppetto.model.values.impl.PointImpl
 
setX(double) - Method in interface org.geppetto.model.values.Point
Sets the value of the 'X' attribute.
setXAxisLabel(String) - Method in interface org.geppetto.model.values.FunctionPlot
Sets the value of the 'XAxis Label' attribute.
setXAxisLabel(String) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
setXValuesLenght(int) - Method in class org.geppetto.core.recordings.RecordingObject
 
setY(double) - Method in class org.geppetto.model.values.impl.PointImpl
 
setY(double) - Method in interface org.geppetto.model.values.Point
Sets the value of the 'Y' attribute.
setYAxisLabel(String) - Method in interface org.geppetto.model.values.FunctionPlot
Sets the value of the 'YAxis Label' attribute.
setYAxisLabel(String) - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
setYValuesLenght(int) - Method in class org.geppetto.core.recordings.RecordingObject
 
setZ(double) - Method in class org.geppetto.model.values.impl.PointImpl
 
setZ(double) - Method in interface org.geppetto.model.values.Point
Sets the value of the 'Z' attribute.
SharedLibraryManager - Class in org.geppetto.core.manager
 
SharedLibraryManager() - Constructor for class org.geppetto.core.manager.SharedLibraryManager
 
SharedLibraryManagerTest - Class in org.geppetto.core
 
SharedLibraryManagerTest() - Constructor for class org.geppetto.core.SharedLibraryManagerTest
 
sharedTypes - Variable in class org.geppetto.model.impl.GeppettoLibraryImpl
The cached value of the 'Shared Types' reference list.
shutdown() - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
shutdown() - Method in interface org.geppetto.frontend.messaging.MessageSender
 
SIMPLE_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Simple Query' class.
SIMPLE_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The meta object id for the 'Simple Query' class.
SIMPLE_QUERY___GET_PATH - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The operation id for the 'Get Path' operation.
SIMPLE_QUERY__COUNT_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Count Query' attribute feature.
SIMPLE_QUERY__COUNT_QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Count Query' attribute.
SIMPLE_QUERY__DESCRIPTION - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Description' attribute.
SIMPLE_QUERY__ID - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Id' attribute.
SIMPLE_QUERY__MATCHING_CRITERIA - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Matching Criteria' containment reference list.
SIMPLE_QUERY__NAME - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Name' attribute.
SIMPLE_QUERY__QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage.Literals
The meta object literal for the 'Query' attribute feature.
SIMPLE_QUERY__QUERY - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Query' attribute.
SIMPLE_QUERY__RETURN_TYPE - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Return Type' reference.
SIMPLE_QUERY__RUN_FOR_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Run For Count' attribute.
SIMPLE_QUERY__SYNCHED - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Synched' attribute.
SIMPLE_QUERY__TAGS - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The feature id for the 'Tags' reference list.
SIMPLE_QUERY_FEATURE_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of structural features of the 'Simple Query' class.
SIMPLE_QUERY_OPERATION_COUNT - Static variable in interface org.geppetto.model.datasources.DatasourcesPackage
The number of operations of the 'Simple Query' class.
SIMPLE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Simple Type' class.
SIMPLE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Simple Type' class.
SIMPLE_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
SIMPLE_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
SIMPLE_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
SIMPLE_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
SIMPLE_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
SIMPLE_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
SIMPLE_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
SIMPLE_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
SIMPLE_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
SIMPLE_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
SIMPLE_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
SIMPLE_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
SIMPLE_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Simple Type' class.
SIMPLE_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Simple Type' class.
SimpleQuery - Interface in org.geppetto.model.datasources
A representation of the model object 'Simple Query'.
simpleQueryEClass - Variable in class org.geppetto.model.datasources.impl.DatasourcesPackageImpl
 
SimpleQueryImpl - Class in org.geppetto.model.datasources.impl
An implementation of the model object 'Simple Query'.
SimpleQueryImpl() - Constructor for class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
SimpleType - Interface in org.geppetto.model.types
A representation of the model object 'Simple Type'.
simpleTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
SimpleTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Simple Type'.
SimpleTypeImpl() - Constructor for class org.geppetto.model.types.impl.SimpleTypeImpl
 
simulate() - Method in class org.geppetto.core.simulator.AExternalProcessSimulator
 
simulate() - Method in interface org.geppetto.core.simulator.ISimulator
The simulate method will tell the simulator to execute to run the simulation.
simulate() - Method in class org.geppetto.core.TestSimulator
 
simulate() - Method in class org.geppetto.core.TestSimulator2
 
simulate() - Method in class org.geppetto.simulation.test.TestSimulatorService
 
simulate() - Method in class org.geppetto.simulator.external.services.LEMSSimulatorService
 
simulate() - Method in class org.geppetto.simulator.remote.services.NSGSimulatorService
 
simulatedInstance - Variable in class org.geppetto.core.data.model.local.LocalSimulationResult
 
simulatedInstance - Variable in class org.geppetto.persistence.db.model.SimulationResult
 
simulationError(IExperiment) - Method in class org.geppetto.simulation.manager.ExperimentRunManager
 
simulationInclusion - Static variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
SimulationResult - Class in org.geppetto.persistence.db.model
 
SimulationResult(String, PersistedData, ResultsFormat) - Constructor for class org.geppetto.persistence.db.model.SimulationResult
 
simulationResults - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
simulationResults - Variable in class org.geppetto.persistence.db.model.Experiment
 
simulationServerConfig - Variable in class org.geppetto.frontend.controllers.ConnectionHandler
 
SimulationServerConfig - Class in org.geppetto.frontend.controllers
Configuration class to keep track of simulation server mode
SimulationServerConfig() - Constructor for class org.geppetto.frontend.controllers.SimulationServerConfig
 
SimulationServerConfig.ServerBehaviorModes - Enum in org.geppetto.frontend.controllers
 
simulationTimeAllowance - Variable in class org.geppetto.core.data.model.local.LocalUserGroup
 
simulationTimeAllowance - Variable in class org.geppetto.persistence.db.model.UserGroup
 
simulator - Variable in class org.geppetto.frontend.admin.AdminErrorObject
 
simulator - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
simulator - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
simulator - Variable in class org.geppetto.simulation.manager.SimulatorRunThread
 
simulator - Static variable in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
 
simulator - Static variable in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
 
simulator - Static variable in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
 
simulator - Static variable in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
 
simulator - Static variable in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
 
SimulatorConfig - Class in org.geppetto.core.beans
 
SimulatorConfig() - Constructor for class org.geppetto.core.beans.SimulatorConfig
 
simulatorConfiguration - Variable in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
simulatorConfiguration - Variable in class org.geppetto.persistence.db.model.AspectConfiguration
 
SimulatorConfiguration - Class in org.geppetto.persistence.db.model
 
SimulatorConfiguration(String, String, float, float, Map<String, String>) - Constructor for class org.geppetto.persistence.db.model.SimulatorConfiguration
 
simulatorID - Variable in class org.geppetto.core.beans.SimulatorConfig
 
simulatorId - Variable in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
simulatorId - Variable in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
simulatorName - Variable in class org.geppetto.core.beans.SimulatorConfig
 
simulatorParameters - Variable in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
simulatorParameters - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
simulatorPath - Variable in class org.geppetto.core.simulator.ExternalSimulatorConfig
 
SimulatorRunThread - Class in org.geppetto.simulation.manager
This class helps incapsulating the execution of a simulator in a separate thread
SimulatorRunThread(IExperiment, ISimulator) - Constructor for class org.geppetto.simulation.manager.SimulatorRunThread
 
SimulatorRuntime - Class in org.geppetto.simulation.manager
 
SimulatorRuntime() - Constructor for class org.geppetto.simulation.manager.SimulatorRuntime
 
simulatorRuntimes - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
SimulatorRuntimeStatus - Enum in org.geppetto.simulation
 
SimulatorRuntimeStatus() - Constructor for enum org.geppetto.simulation.SimulatorRuntimeStatus
 
simulatorServices - Variable in class org.geppetto.simulation.manager.ExperimentRunThread
 
size() - Method in class org.geppetto.model.swc.format.SWCModel
 
size - Variable in class org.geppetto.model.types.impl.ArrayTypeImpl
The cached value of the 'Size' attribute.
SIZE_EDEFAULT - Static variable in class org.geppetto.model.types.impl.ArrayTypeImpl
The default value of the 'Size' attribute.
SKELETON_ANIMATION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Skeleton Animation' class.
SKELETON_ANIMATION - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Skeleton Animation' class.
SKELETON_ANIMATION__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Group Elements' reference list.
SKELETON_ANIMATION__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
SKELETON_ANIMATION__SKELETON_TRANSFORMATION_SERIES - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Skeleton Transformation Series' reference list feature.
SKELETON_ANIMATION__SKELETON_TRANSFORMATION_SERIES - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Skeleton Transformation Series' reference list.
SKELETON_ANIMATION__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
SKELETON_ANIMATION_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Skeleton Animation' class.
SKELETON_ANIMATION_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Skeleton Animation' class.
SKELETON_TRANSFORMATION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Skeleton Transformation' class.
SKELETON_TRANSFORMATION - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Skeleton Transformation' class.
SKELETON_TRANSFORMATION__SKELETON_TRANSFORMATION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Skeleton Transformation' attribute list feature.
SKELETON_TRANSFORMATION__SKELETON_TRANSFORMATION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Skeleton Transformation' attribute list.
SKELETON_TRANSFORMATION_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Skeleton Transformation' class.
SKELETON_TRANSFORMATION_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Skeleton Transformation' class.
SkeletonAnimation - Interface in org.geppetto.model.values
A representation of the model object 'Skeleton Animation'.
skeletonAnimationEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
SkeletonAnimationImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Skeleton Animation'.
SkeletonAnimationImpl() - Constructor for class org.geppetto.model.values.impl.SkeletonAnimationImpl
 
skeletonTransformation - Variable in class org.geppetto.model.values.impl.SkeletonTransformationImpl
The cached value of the 'Skeleton Transformation' attribute list.
SkeletonTransformation - Interface in org.geppetto.model.values
A representation of the model object 'Skeleton Transformation'.
skeletonTransformationEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
SkeletonTransformationImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Skeleton Transformation'.
SkeletonTransformationImpl() - Constructor for class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
skeletonTransformationSeries - Variable in class org.geppetto.model.values.impl.SkeletonAnimationImpl
The cached value of the 'Skeleton Transformation Series' reference list.
SOMA_COLOR - Static variable in class org.geppetto.model.neuroml.visualUtils.ModelInterpreterVisualConstants
 
sortNodes(List<T>) - Static method in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
Sorts a list of Nodes
spaceAllowance - Variable in class org.geppetto.core.data.model.local.LocalUserGroup
 
spaceAllowance - Variable in class org.geppetto.persistence.db.model.UserGroup
 
Sphere - Interface in org.geppetto.model.values
A representation of the model object 'Sphere'.
SPHERE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Sphere' class.
SPHERE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Sphere' class.
SPHERE__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Group Elements' reference list.
SPHERE__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
SPHERE__RADIUS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Radius' attribute feature.
SPHERE__RADIUS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Radius' attribute.
SPHERE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
SPHERE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Sphere' class.
SPHERE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Sphere' class.
sphereEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
SphereImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Sphere'.
SphereImpl() - Constructor for class org.geppetto.model.values.impl.SphereImpl
 
startDate - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
startDate - Variable in class org.geppetto.persistence.db.model.Experiment
 
started - Variable in class org.geppetto.core.simulator.AExternalProcessSimulator
 
STATE_VARIABLE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'State Variable Type' class.
STATE_VARIABLE_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'State Variable Type' class.
STATE_VARIABLE_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
STATE_VARIABLE_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
STATE_VARIABLE_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
STATE_VARIABLE_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
STATE_VARIABLE_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
STATE_VARIABLE_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
STATE_VARIABLE_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
STATE_VARIABLE_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
STATE_VARIABLE_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
STATE_VARIABLE_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
STATE_VARIABLE_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
STATE_VARIABLE_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
STATE_VARIABLE_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
STATE_VARIABLE_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
STATE_VARIABLE_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'State Variable Type' class.
STATE_VARIABLE_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'State Variable Type' class.
StateVariableType - Interface in org.geppetto.model.types
A representation of the model object 'State Variable Type'.
stateVariableTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
StateVariableTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'State Variable Type'.
StateVariableTypeImpl() - Constructor for class org.geppetto.model.types.impl.StateVariableTypeImpl
 
static_ - Variable in class org.geppetto.model.variables.impl.VariableImpl
The cached value of the 'Static' attribute.
STATIC_EDEFAULT - Static variable in class org.geppetto.model.variables.impl.VariableImpl
The default value of the 'Static' attribute.
status - Variable in class org.geppetto.core.data.JsonRequestException
 
status - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
status - Variable in class org.geppetto.frontend.admin.AdminSimulationObject
 
status - Variable in class org.geppetto.persistence.db.model.Experiment
 
STEP_VALUE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The default value of the 'Step Value' attribute.
stepValue - Variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The cached value of the 'Step Value' attribute.
storage - Variable in class org.geppetto.frontend.admin.AdminUserObject
 
storeEntity(T) - Method in class org.geppetto.persistence.db.DBManager
Save or update an entity to the DB.
STRING_TO_STRING_MAP - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'String To String Map' class.
STRING_TO_STRING_MAP - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'String To String Map' class.
STRING_TO_STRING_MAP__KEY - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Key' attribute feature.
STRING_TO_STRING_MAP__KEY - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Key' attribute.
STRING_TO_STRING_MAP__VALUE - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Value' attribute feature.
STRING_TO_STRING_MAP__VALUE - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Value' attribute.
STRING_TO_STRING_MAP_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'String To String Map' class.
STRING_TO_STRING_MAP_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'String To String Map' class.
STRING_TO_VALUE_MAP - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'String To Value Map' class.
STRING_TO_VALUE_MAP - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'String To Value Map' class.
STRING_TO_VALUE_MAP__KEY - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Key' attribute feature.
STRING_TO_VALUE_MAP__KEY - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Key' attribute.
STRING_TO_VALUE_MAP__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Value' containment reference feature.
STRING_TO_VALUE_MAP__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Value' containment reference.
STRING_TO_VALUE_MAP_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'String To Value Map' class.
STRING_TO_VALUE_MAP_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'String To Value Map' class.
StringSplitter - Class in org.geppetto.core.utilities
 
StringSplitter() - Constructor for class org.geppetto.core.utilities.StringSplitter
 
stringToStringMapEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
StringToStringMapImpl - Class in org.geppetto.model.impl
An implementation of the model object 'String To String Map'.
StringToStringMapImpl() - Constructor for class org.geppetto.model.impl.StringToStringMapImpl
 
stringToValueMapEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
StringToValueMapImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'String To Value Map'.
StringToValueMapImpl() - Constructor for class org.geppetto.model.values.impl.StringToValueMapImpl
 
submitTask(ThreadPoolExecutor, Runnable) - Method in class org.geppetto.frontend.messaging.DefaultMessageSender
 
superAddValues(RecordingObject) - Method in class org.geppetto.core.recordings.GeppettoRecordingCreator
General method for adding datasets to an HDF5 File.
superType - Variable in class org.geppetto.model.types.impl.TypeImpl
The cached value of the 'Super Type' reference list.
supportedOuputs(String) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
supports(Class<?>) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
swapType(ImportType, Type, GeppettoLibrary) - Method in class org.geppetto.core.model.GeppettoModelAccess
Note this command won't remove the typeToBeReplaced from its container in case it's being iterated over
SWCException - Exception in org.geppetto.model.swc.format
 
SWCException(String, Throwable) - Constructor for exception org.geppetto.model.swc.format.SWCException
 
SWCException(String) - Constructor for exception org.geppetto.model.swc.format.SWCException
 
SWCException(Throwable) - Constructor for exception org.geppetto.model.swc.format.SWCException
 
SWCModel - Class in org.geppetto.model.swc.format
 
SWCModel() - Constructor for class org.geppetto.model.swc.format.SWCModel
 
swcModelInterpreterConfig - Variable in class org.geppetto.model.swc.SWCModelInterpreterService
 
SWCModelInterpreterService - Class in org.geppetto.model.swc
 
SWCModelInterpreterService() - Constructor for class org.geppetto.model.swc.SWCModelInterpreterService
 
SWCModelInterpreterTest - Class in org.geppetto.model.swc.test
 
SWCModelInterpreterTest() - Constructor for class org.geppetto.model.swc.test.SWCModelInterpreterTest
 
SWCModelInterpreterTest.TestSwitch - Class in org.geppetto.model.swc.test
 
SWCPoint - Class in org.geppetto.model.swc.format
 
SWCPoint(int, int, int, double, double, double, double) - Constructor for class org.geppetto.model.swc.format.SWCPoint
 
SWCReader - Class in org.geppetto.model.swc.format
 
SWCReader() - Constructor for class org.geppetto.model.swc.format.SWCReader
 
SWCReaderTest - Class in org.geppetto.model.swc.test
 
SWCReaderTest() - Constructor for class org.geppetto.model.swc.test.SWCReaderTest
 
SynchableSerializer - Class in org.geppetto.core.model
This serializer makes it so that only objects for which synched==false are serialized.
SynchableSerializer(JacksonOptions) - Constructor for class org.geppetto.core.model.SynchableSerializer
 
synched - Variable in class org.geppetto.model.impl.NodeImpl
The cached value of the 'Synched' attribute.
synched - Variable in class org.geppetto.model.impl.TagImpl
The cached value of the 'Synched' attribute.
synched - Variable in class org.geppetto.model.values.impl.ValueImpl
The cached value of the 'Synched' attribute.
SYNCHED_EDEFAULT - Static variable in class org.geppetto.model.impl.NodeImpl
The default value of the 'Synched' attribute.
SYNCHED_EDEFAULT - Static variable in class org.geppetto.model.impl.TagImpl
The default value of the 'Synched' attribute.
SYNCHED_EDEFAULT - Static variable in class org.geppetto.model.values.impl.ValueImpl
The default value of the 'Synched' attribute.

T

TAG - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Tag' class.
TAG - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Tag' class.
Tag - Interface in org.geppetto.model
A representation of the model object 'Tag'.
TAG__NAME - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Name' attribute feature.
TAG__NAME - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Name' attribute.
TAG__SYNCHED - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Synched' attribute.
TAG__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Tags' containment reference list feature.
TAG__TAGS - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Tags' containment reference list.
TAG_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Tag' class.
TAG_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Tag' class.
tagEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
TagImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Tag'.
TagImpl() - Constructor for class org.geppetto.model.impl.TagImpl
 
tags - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Tags' containment reference list.
tags - Variable in class org.geppetto.model.impl.NodeImpl
The cached value of the 'Tags' reference list.
tags - Variable in class org.geppetto.model.impl.TagImpl
The cached value of the 'Tags' containment reference list.
TARGET_VARIABLE_PATH_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.RunnableQueryImpl
The default value of the 'Target Variable Path' attribute.
targetLibrary - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Target Library' reference.
targetVariablePath - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.RunnableQueryDT
 
targetVariablePath - Variable in class org.geppetto.model.datasources.impl.RunnableQueryImpl
The cached value of the 'Target Variable Path' attribute.
teardown() - Static method in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
teardown() - Static method in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
teardown() - Static method in class org.geppetto.core.TestConvertDATToRecordingClass
 
teardown() - Static method in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
teardown() - Static method in class org.geppetto.core.TestGeppettoRecordingsCreator
 
teardown() - Static method in class org.geppetto.core.TestHDFBindings
 
teardown() - Static method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
test() - Method in class org.geppetto.core.HDF5ReaderTest
 
test() - Method in class org.geppetto.core.SharedLibraryManagerTest
 
test() - Method in class org.geppetto.core.TestDropboxUploadService
 
Test - Class in org.geppetto.frontend.tests
 
Test() - Constructor for class org.geppetto.frontend.tests.Test
 
test() - Method in class org.geppetto.simulation.test.ViewProcessorTest
 
test01SetUser() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test01SetUser() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test02GetUser() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
Test method for GeppettoManager.getUser().
test02LoadProjectNegative() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test03LoadProject() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test03LoadProject() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test04RuntimeProject() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test04RuntimeProject() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test05LoadExperiment() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test05LoadExperiment() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test06CheckExperimentsStatus() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test06CheckExperimentsStatus() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test07SetModelParametersNegativeNoDesign() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test07SetModelParametersNegativeNoDesign() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test08SetWatchedVariablesNegativeNoDesign() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#setWatchedVariables(java.util.List, org.geppetto.core.data.model.IExperiment, org.geppetto.core.data.model.IGeppettoProject).
test08SetWatchedVariablesNegativeNoDesign() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#setWatchedVariables(java.util.List, org.geppetto.core.data.model.IExperiment, org.geppetto.core.data.model.IGeppettoProject).
test09NewExperiment() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test09NewExperiment() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test10LoadNewExperiment() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test11SetModelParameters() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test11SetModelParameters() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test12SetModelParametersNegativeWrongParameter() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test12SetModelParametersNegativeWrongParameter() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test13SetWatchedVariables() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#setWatchedVariables(java.util.List, org.geppetto.core.data.model.IExperiment, org.geppetto.core.data.model.IGeppettoProject).
test13SetWatchedVariables() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#setWatchedVariables(java.util.List, org.geppetto.core.data.model.IExperiment, org.geppetto.core.data.model.IGeppettoProject).
test14SetWatchedVariablesNegativeWrongVariable() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#setWatchedVariables(java.util.List, org.geppetto.core.data.model.IExperiment, org.geppetto.core.data.model.IGeppettoProject).
test15CheckExperimentsStatusAgain() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test16RunExperiment() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test16RunExperiment() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test17CheckExperimentsStatusAgain2() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test18CancelExperimentRun() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test19CheckExperimentsStatusAgain3() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test20RunExperimentAgain() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test21CheckExperimentsStatusAgain4() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test22PlayExperiment() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#playExperiment(java.lang.String, org.geppetto.core.data.model.IExperiment).
test22PlayExperiment() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
Test method for org.geppetto.simulation.manager.GeppettoManager#playExperiment(java.lang.String, org.geppetto.core.data.model.IExperiment).
test23DownloadModel() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test23DownloadModel() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test24DownloadResults() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test24DownloadResults() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test25GetSupportedOuputs() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test25GetSupportedOuputs() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test26GetScope() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test27DeleteExperiment() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test27DeleteExperiment() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test28CheckExperimentsStatusAgain5() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test29CloseProject() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test29CloseProject() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
test30DeleteProject() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
test30DeleteProject() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
testAcnet2() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testAcnet2HDF5() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testBalanced() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testBalanced() - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
testBalancedHDF5() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testBalancedHDF5() - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
testBBP() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testC302C() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testC302C0() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testCA1() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testCA1() - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
testCA1() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testCloneExperiment() - Method in class org.geppetto.persistence.db.DBManagerTest
 
TestConversion - Class in org.geppetto.core
 
TestConversion() - Constructor for class org.geppetto.core.TestConversion
 
TestConversion2 - Class in org.geppetto.core
 
TestConversion2() - Constructor for class org.geppetto.core.TestConversion2
 
TestConvertACNet2DATToRecordingClass - Class in org.geppetto.core
 
TestConvertACNet2DATToRecordingClass() - Constructor for class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
TestConvertBigDATToRecordingClass - Class in org.geppetto.core
 
TestConvertBigDATToRecordingClass() - Constructor for class org.geppetto.core.TestConvertBigDATToRecordingClass
 
TestConvertDATToRecordingClass - Class in org.geppetto.core
 
TestConvertDATToRecordingClass() - Constructor for class org.geppetto.core.TestConvertDATToRecordingClass
 
TestConvertMuscleDATToRecordingClass - Class in org.geppetto.core
 
TestConvertMuscleDATToRecordingClass() - Constructor for class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
testDeleteExperiment() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testDoGET() - Method in class org.geppetto.core.GeppettoHTTPClientTest
 
testDoJSONPost() - Method in class org.geppetto.core.GeppettoHTTPClientTest
 
TestDropboxUploadService - Class in org.geppetto.core
 
TestDropboxUploadService() - Constructor for class org.geppetto.core.TestDropboxUploadService
 
testEquals() - Method in class org.geppetto.model.test.PointerUtilityTest
testExample1() - Method in class org.geppetto.core.HDF5ReaderTest
 
testExample2() - Method in class org.geppetto.core.HDF5ReaderTest
 
testExample3() - Method in class org.geppetto.core.HDF5ReaderTest
 
testExample4() - Method in class org.geppetto.model.nwb.test.NWBModelInterpreterTest
 
testExperimentCreate() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testExperimentUpdate() - Method in class org.geppetto.persistence.db.DBManagerTest
 
TestFeatures - Enum in org.geppetto.frontend.tests
 
TestFeatures(String) - Constructor for enum org.geppetto.frontend.tests.TestFeatures
 
testGaps() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
TestGeppettoRecordingsCreator - Class in org.geppetto.core
Creates GeppettoRecordings Class
TestGeppettoRecordingsCreator() - Constructor for class org.geppetto.core.TestGeppettoRecordingsCreator
 
testGetGeppettoLibrary() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetInstancePath() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointer() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative1() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative2() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative3() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative4() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative5() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative6() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetPointerNegative7() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetType() - Method in class org.geppetto.model.test.PointerUtilityTest
testGetVariable() - Method in class org.geppetto.model.test.PointerUtilityTest
TestHDFBindings - Class in org.geppetto.core
Test functionality to create and read hdf5 file
TestHDFBindings() - Constructor for class org.geppetto.core.TestHDFBindings
 
testHH() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testHHInputExposures() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testHHTut() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testJNeuroML() - Method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
"" Test method for org.geppetto.model.neuroml.services.LEMSConversionService#readModel(java.net.URL).
testJNeuroMLExecution() - Method in class org.geppetto.simulator.external.tests.JNeuroMLSimulatorServiceTest
Test method
testLinkDropBoxAccount() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
testLinkDropBoxAccount() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
TestModel - Class in org.geppetto.frontend.tests
 
TestModel() - Constructor for class org.geppetto.frontend.tests.TestModel
 
testModelACnet() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testModelInterpretation(String, String) - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest.ModelTester
 
TestModelInterpreter - Class in org.geppetto.core
Dummy model interpreter used for testing purposes
TestModelInterpreter() - Constructor for class org.geppetto.core.TestModelInterpreter
 
TestModelInterpreter2 - Class in org.geppetto.core
Dummy model interpreter used for testing purposes
TestModelInterpreter2() - Constructor for class org.geppetto.core.TestModelInterpreter2
 
TestModelInterpreterService - Class in org.geppetto.simulation.test
 
TestModelInterpreterService() - Constructor for class org.geppetto.simulation.test.TestModelInterpreterService
 
TestModelInterpreterService.TestSetParameterFeature - Class in org.geppetto.simulation.test
 
testModelL23Smith() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testModels - Variable in class org.geppetto.frontend.tests.TestModule
 
TestModule - Class in org.geppetto.frontend.tests
 
TestModule() - Constructor for class org.geppetto.frontend.tests.TestModule
 
testModules - Variable in class org.geppetto.frontend.tests.Test
 
testMultipleNewAndDeleteExperiments() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testMultipleQueriesPart1() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testMultipleQueriesPart2() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testNetPyNEDeleteJobs() - Method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
Test method for NetPyNESimulatorService.
testNetPyNEExecution() - Method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
Test method for org.geppetto.simulator.external.services.NeetPyNESimulatorService.
testNetPyNEExecution() - Method in class org.geppetto.simulator.external.tests.NetPyNESimulatorServiceTest
Test method for NetPyNESimulatorService.
testNetPyNEList() - Method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
Test method for NetPyNESimulatorService.
testNetPyNEProcessDone() - Method in class org.geppetto.simulator.external.tests.NetPyNENSGSimulatorServiceTest
Test method for NetPyNESimulatorService.
testNeuron() - Method in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
"" Test method for org.geppetto.model.neuroml.services.LEMSConversionService#readModel(java.net.URL).
testNeuronDeleteJobs() - Method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
Test method for NeuronSimulatorService.
testNeuronExecution() - Method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
Test method for NeuronSimulatorService.
testNeuronExecution() - Method in class org.geppetto.simulator.external.tests.NeuronSimulatorServiceTest
Test method for NeuronSimulatorService.
testNeuronList() - Method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
Test method for NeuronSimulatorService.
testNeuronProcessDone() - Method in class org.geppetto.simulator.external.tests.NeuronNSGSimulatorServiceTest
Test method for NeuronSimulatorService.
testNewExperiment() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testNPEOnGetInstancePath() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testProcessTemplate() - Method in class org.geppetto.core.VelocityUtilsTest
testReadAcnet() - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
testReadAcnetH5() - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
testReader() - Method in class org.geppetto.core.GeppettoModelReaderTest
 
testReadModelc302() - Method in class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
 
testReadModelHHCell() - Method in class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
"" Test method for org.geppetto.model.neuroml.services.LemsMLModelInterpreterService#readModel(java.net.URL).
testReadModelMuscle() - Method in class org.geppetto.model.neuroml.test.LEMSModelInterpreterServiceTest
 
testReadModelPVDR() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
Test method for org.geppetto.model.neuroml.services.LemsMLModelInterpreterService#readModel(java.net.URL).
testReadNWB() - Method in class org.geppetto.model.nwb.test.NWBModelInterpreterTest
 
testReadSWC() - Method in class org.geppetto.model.swc.test.SWCReaderTest
 
testReadTraubLargeConns() - Method in class org.geppetto.model.neuroml.test.PerformanceTest
Test method for org.geppetto.model.neuroml.services.LemsMLModelInterpreterService#readModel(java.net.URL).
testReadWrite() - Method in class org.geppetto.model.test.ReadWriteTest
 
testRegisterConversionService() - Method in class org.geppetto.core.ServiceRegistryTest
"" Test method for org.geppetto.core.services.registry.ServicesRegistry#registerModelInterpreterService(org.geppetto.core.model.IModelInterpreter).
testRegisterModelInterpreterService() - Method in class org.geppetto.core.ServiceRegistryTest
"" Test method for org.geppetto.core.services.registry.ServicesRegistry#registerModelInterpreterService(org.geppetto.core.model.IModelInterpreter).
testRegisterSimulatorService() - Method in class org.geppetto.core.ServiceRegistryTest
"" Test method for org.geppetto.core.services.registry.ServicesRegistry#registerModelInterpreterService(org.geppetto.core.model.IModelInterpreter).
testS3Operations() - Method in class org.geppetto.core.s3.S3ManagerTest
 
testSerializer() - Method in class org.geppetto.core.GeppettoSerializerTest
 
TestSetParameterFeature() - Constructor for class org.geppetto.simulation.test.TestModelInterpreterService.TestSetParameterFeature
 
testSetParameters() - Method in class org.geppetto.persistence.db.DBManagerTest
 
TestSimulator - Class in org.geppetto.core
Dummy simulator used for testing purposes
TestSimulator() - Constructor for class org.geppetto.core.TestSimulator
 
TestSimulator2 - Class in org.geppetto.core
Dummy simulator used for testing purposes
TestSimulator2() - Constructor for class org.geppetto.core.TestSimulator2
 
testSimulatorResultsUpdate() - Method in class org.geppetto.persistence.db.DBManagerTest
 
TestSimulatorService - Class in org.geppetto.simulation.test
 
TestSimulatorService() - Constructor for class org.geppetto.simulation.test.TestSimulatorService
 
testStorage() - Method in class org.geppetto.persistence.db.DBManagerTest
 
testSummary(String, String, IModelInterpreter) - Static method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testSupportedOutputs() - Method in class org.geppetto.core.ServiceRegistryTest
"" Test method for org.geppetto.core.services.registry.ServicesRegistry#registerModelInterpreterService(org.geppetto.core.model.IModelInterpreter).
TestSwitch() - Constructor for class org.geppetto.model.swc.test.SWCModelInterpreterTest.TestSwitch
 
testTraub() - Method in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
testTraub() - Method in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
testTraub() - Method in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
testUnlinkDropBoxAccount() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
testUnlinkDropBoxAccount() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
testUploadModelToDropBox() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
testUploadModelToDropBox() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
testUploadResultsToDropBox() - Method in class org.geppetto.simulation.test.GeppettoManagerTest
testUploadResultsToDropBox() - Method in class org.geppetto.simulation.test.NoAccessGeppettoManagerTest
testUserGroups() - Method in class org.geppetto.persistence.db.DBManagerTest
 
TestUtilities - Class in org.geppetto.simulation.test
 
TestUtilities() - Constructor for class org.geppetto.simulation.test.TestUtilities
 
testVisualTreeFeature() - Method in class org.geppetto.model.swc.test.SWCModelInterpreterTest
 
TestZippingProject - Class in org.geppetto.simulation.test
Junit test for zipping project contens
TestZippingProject() - Constructor for class org.geppetto.simulation.test.TestZippingProject
 
testZippingProject() - Method in class org.geppetto.simulation.test.TestZippingProject
 
testZippingProject1() - Method in class org.geppetto.simulation.test.TestZippingProject
 
testZippingProject2() - Method in class org.geppetto.simulation.test.TestZippingProject
 
testZippingProject3() - Method in class org.geppetto.simulation.test.TestZippingProject
 
testZippingProject4() - Method in class org.geppetto.simulation.test.TestZippingProject
 
text - Variable in enum org.geppetto.core.data.model.ExperimentStatus
 
text - Variable in enum org.geppetto.core.data.model.PersistedDataType
 
text - Variable in enum org.geppetto.core.data.model.ResultsFormat
 
text - Variable in enum org.geppetto.core.data.model.UserPrivileges
 
text - Variable in enum org.geppetto.frontend.messages.InboundMessages
 
text - Variable in enum org.geppetto.frontend.messages.OutboundMessages
 
text - Variable in enum org.geppetto.frontend.Resources
 
text - Variable in enum org.geppetto.frontend.tests.TestFeatures
 
text - Variable in class org.geppetto.model.values.impl.TextImpl
The cached value of the 'Text' attribute.
Text - Interface in org.geppetto.model.values
A representation of the model object 'Text'.
TEXT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Text' class.
TEXT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Text' class.
TEXT__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
TEXT__TEXT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Text' attribute feature.
TEXT__TEXT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Text' attribute.
TEXT_EDEFAULT - Static variable in class org.geppetto.model.values.impl.TextImpl
The default value of the 'Text' attribute.
TEXT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Text' class.
TEXT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Text' class.
TEXT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Text Type' class.
TEXT_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Text Type' class.
TEXT_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
TEXT_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
TEXT_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
TEXT_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
TEXT_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
TEXT_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
TEXT_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
TEXT_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
TEXT_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
TEXT_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
TEXT_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
TEXT_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
TEXT_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
TEXT_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
TEXT_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Text Type' class.
TEXT_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Text Type' class.
textEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
TextImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Text'.
TextImpl() - Constructor for class org.geppetto.model.values.impl.TextImpl
 
TextMessageSender(String, OutboundMessages) - Constructor for class org.geppetto.frontend.messaging.DefaultMessageSender.TextMessageSender
 
TextType - Interface in org.geppetto.model.types
A representation of the model object 'Text Type'.
textTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
TextTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Text Type'.
TextTypeImpl() - Constructor for class org.geppetto.model.types.impl.TextTypeImpl
 
TIFF_VALUE - Static variable in enum org.geppetto.model.values.ImageFormat
The 'TIFF' literal value.
TIME_SERIES - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Time Series' class.
TIME_SERIES - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Time Series' class.
TIME_SERIES__SCALING_FACTOR - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Scaling Factor' attribute feature.
TIME_SERIES__SCALING_FACTOR - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Scaling Factor' attribute.
TIME_SERIES__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
TIME_SERIES__UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Unit' containment reference feature.
TIME_SERIES__UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Unit' containment reference.
TIME_SERIES__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Value' attribute list feature.
TIME_SERIES__VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Value' attribute list.
TIME_SERIES_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Time Series' class.
TIME_SERIES_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Time Series' class.
timer - Variable in class org.geppetto.simulation.manager.ExperimentRunManager
 
TimeSeries - Interface in org.geppetto.model.values
A representation of the model object 'Time Series'.
timeSeriesEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
TimeSeriesImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Time Series'.
TimeSeriesImpl() - Constructor for class org.geppetto.model.values.impl.TimeSeriesImpl
 
timestep - Variable in class org.geppetto.core.data.model.local.LocalSimulatorConfiguration
 
timeStep - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
timestep - Variable in class org.geppetto.persistence.db.model.SimulatorConfiguration
 
timeStepUnit - Variable in class org.geppetto.core.simulator.ASimulator
 
title - Variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The cached value of the 'Title' attribute.
TITLE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The default value of the 'Title' attribute.
token - Variable in class org.geppetto.core.data.model.local.LocalUser
 
TOP_RADIUS_EDEFAULT - Static variable in class org.geppetto.model.values.impl.CylinderImpl
The default value of the 'Top Radius' attribute.
topRadius - Variable in class org.geppetto.model.values.impl.CylinderImpl
The cached value of the 'Top Radius' attribute.
toString() - Method in enum org.geppetto.core.data.model.ExperimentStatus
 
toString() - Method in enum org.geppetto.core.data.model.PersistedDataType
 
toString() - Method in enum org.geppetto.core.data.model.ResultsFormat
 
toString() - Method in enum org.geppetto.core.data.model.UserPrivileges
 
toString() - Method in class org.geppetto.core.services.registry.ServicesRegistry.ConversionServiceKey
 
toString() - Method in enum org.geppetto.frontend.messages.InboundMessages
 
toString() - Method in enum org.geppetto.frontend.messages.OutboundMessages
 
toString() - Method in enum org.geppetto.frontend.Resources
 
toString() - Method in enum org.geppetto.frontend.tests.TestFeatures
 
toString() - Method in enum org.geppetto.model.datasources.BooleanOperator
Returns the literal value of the enumerator, which is its string representation.
toString() - Method in class org.geppetto.model.datasources.impl.DataSourceImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.DataSourceLibraryConfigurationImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.ProcessQueryImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.QueryImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.QueryResultImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.QueryResultsImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.RunnableQueryImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
 
toString() - Method in class org.geppetto.model.datasources.impl.SimpleQueryImpl
 
toString() - Method in enum org.geppetto.model.FileFormat
Returns the literal value of the enumerator, which is its string representation.
toString() - Method in class org.geppetto.model.impl.DomainModelImpl
 
toString() - Method in class org.geppetto.model.impl.ExperimentStateImpl
 
toString() - Method in class org.geppetto.model.impl.ExternalDomainModelImpl
 
toString() - Method in class org.geppetto.model.impl.GeppettoModelImpl
 
toString() - Method in class org.geppetto.model.impl.ModelFormatImpl
 
toString() - Method in class org.geppetto.model.impl.NodeImpl
 
toString() - Method in class org.geppetto.model.impl.StringToStringMapImpl
 
toString() - Method in class org.geppetto.model.impl.TagImpl
 
toString() - Method in class org.geppetto.model.swc.format.SWCPoint
 
toString() - Method in class org.geppetto.model.types.impl.ArrayTypeImpl
 
toString() - Method in class org.geppetto.model.types.impl.ImportTypeImpl
 
toString() - Method in class org.geppetto.model.types.impl.TypeImpl
 
toString() - Method in enum org.geppetto.model.values.Connectivity
Returns the literal value of the enumerator, which is its string representation.
toString() - Method in enum org.geppetto.model.values.ImageFormat
Returns the literal value of the enumerator, which is its string representation.
toString() - Method in class org.geppetto.model.values.impl.ArgumentImpl
 
toString() - Method in class org.geppetto.model.values.impl.ArrayElementImpl
 
toString() - Method in class org.geppetto.model.values.impl.ColladaImpl
 
toString() - Method in class org.geppetto.model.values.impl.ConnectionImpl
 
toString() - Method in class org.geppetto.model.values.impl.CylinderImpl
 
toString() - Method in class org.geppetto.model.values.impl.ExpressionImpl
 
toString() - Method in class org.geppetto.model.values.impl.FunctionPlotImpl
 
toString() - Method in class org.geppetto.model.values.impl.HTMLImpl
 
toString() - Method in class org.geppetto.model.values.impl.ImageImpl
 
toString() - Method in class org.geppetto.model.values.impl.ImportValueImpl
 
toString() - Method in class org.geppetto.model.values.impl.OBJImpl
 
toString() - Method in class org.geppetto.model.values.impl.PointerElementImpl
 
toString() - Method in class org.geppetto.model.values.impl.PointerImpl
 
toString() - Method in class org.geppetto.model.values.impl.PointImpl
 
toString() - Method in class org.geppetto.model.values.impl.QuantityImpl
 
toString() - Method in class org.geppetto.model.values.impl.SkeletonTransformationImpl
 
toString() - Method in class org.geppetto.model.values.impl.SphereImpl
 
toString() - Method in class org.geppetto.model.values.impl.StringToValueMapImpl
 
toString() - Method in class org.geppetto.model.values.impl.TextImpl
 
toString() - Method in class org.geppetto.model.values.impl.TimeSeriesImpl
 
toString() - Method in class org.geppetto.model.values.impl.UnitImpl
 
toString() - Method in class org.geppetto.model.values.impl.URLImpl
 
toString() - Method in class org.geppetto.model.values.impl.ValueImpl
 
toString() - Method in class org.geppetto.model.values.impl.VisualGroupElementImpl
 
toString() - Method in class org.geppetto.model.values.impl.VisualGroupImpl
 
toString() - Method in class org.geppetto.model.variables.impl.VariableImpl
 
TransportMessageFactory - Class in org.geppetto.frontend.messages
Utility class to create JSON objects to be send to the clients.
TransportMessageFactory() - Constructor for class org.geppetto.frontend.messages.TransportMessageFactory
 
trimOuterElement(String) - Method in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
twoCell(String, int) - Method in class org.geppetto.persistence.util.DBTestData
 
type - Variable in class org.geppetto.core.data.FindLocalProjectsVisitor
 
type - Variable in class org.geppetto.core.data.model.local.LocalPersistedData
 
type - Variable in class org.geppetto.frontend.messages.GeppettoTransportMessage
 
type - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.Preprocessor
 
type - Variable in class org.geppetto.frontend.messaging.MessageSenderEvent
 
Type() - Constructor for enum org.geppetto.frontend.messaging.MessageSenderEvent.Type
 
type - Variable in class org.geppetto.model.datasources.impl.QueryMatchingCriteriaImpl
The cached value of the 'Type' reference list.
type - Variable in class org.geppetto.model.neuroml.features.DefaultViewCustomiserFeature
 
type - Variable in class org.geppetto.model.neuroml.features.LEMSParametersFeature
 
type - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
type - Variable in class org.geppetto.model.swc.format.SWCPoint
 
Type - Interface in org.geppetto.model.types
A representation of the model object 'Type'.
TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Type' class.
TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Type' class.
type - Variable in class org.geppetto.model.values.impl.PointerElementImpl
The cached value of the 'Type' reference.
type - Variable in class org.geppetto.model.values.impl.VisualGroupImpl
The cached value of the 'Type' attribute.
type - Variable in class org.geppetto.persistence.db.model.PersistedData
 
TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Extends Type' operation.
TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Get Default Value' operation.
TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Abstract' attribute feature.
TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Domain Model' reference feature.
TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Referenced Variables' reference list feature.
TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Super Type' reference list feature.
TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Visual Type' reference feature.
TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
TYPE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.VisualGroupImpl
The default value of the 'Type' attribute.
TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Type' class.
TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Type' class.
TYPE_TO_VALUE_MAP - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Type To Value Map' class.
TYPE_TO_VALUE_MAP - Static variable in interface org.geppetto.model.variables.VariablesPackage
The meta object id for the 'Type To Value Map' class.
TYPE_TO_VALUE_MAP__KEY - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Key' reference feature.
TYPE_TO_VALUE_MAP__KEY - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Key' reference.
TYPE_TO_VALUE_MAP__VALUE - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Value' containment reference feature.
TYPE_TO_VALUE_MAP__VALUE - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Value' containment reference.
TYPE_TO_VALUE_MAP_FEATURE_COUNT - Static variable in interface org.geppetto.model.variables.VariablesPackage
The number of structural features of the 'Type To Value Map' class.
TYPE_TO_VALUE_MAP_OPERATION_COUNT - Static variable in interface org.geppetto.model.variables.VariablesPackage
The number of operations of the 'Type To Value Map' class.
typeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
typeFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
TypeFactory - Class in org.geppetto.model.neuroml.modelInterpreterUtils
 
TypeFactory(Map<String, Type>) - Constructor for class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
typeFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
typeFactory - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
typeFactory - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
typeFactory - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
TypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Type'.
TypeImpl() - Constructor for class org.geppetto.model.types.impl.TypeImpl
 
types - Variable in class org.geppetto.model.impl.GeppettoLibraryImpl
The cached value of the 'Types' containment reference list.
types - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
types - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
types - Variable in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
types - Variable in class org.geppetto.model.variables.impl.VariableImpl
The cached value of the 'Types' reference list.
TypesAdapterFactory - Class in org.geppetto.model.types.util
The Adapter Factory for the model.
TypesAdapterFactory() - Constructor for class org.geppetto.model.types.util.TypesAdapterFactory
Creates an instance of the adapter factory.
typesFactory - Static variable in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
typesFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
TypesFactory - Interface in org.geppetto.model.types
The Factory for the model.
TypesFactoryImpl - Class in org.geppetto.model.types.impl
An implementation of the model Factory.
TypesFactoryImpl() - Constructor for class org.geppetto.model.types.impl.TypesFactoryImpl
Creates an instance of the factory.
typesMap - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.TypeFactory
 
typesMap - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
TypesPackage - Interface in org.geppetto.model.types
The Package for the model.
TypesPackage.Literals - Interface in org.geppetto.model.types
Defines literals for the meta objects that represent each class, each feature of each class, each operation of each class, each enum, and each data type
TypesPackageImpl - Class in org.geppetto.model.types.impl
An implementation of the model Package.
TypesPackageImpl() - Constructor for class org.geppetto.model.types.impl.TypesPackageImpl
Creates an instance of the model Package, registered with EPackage.Registry by the package package URI value.
TypesSwitch<T> - Class in org.geppetto.model.types.util
The Switch for the model's inheritance hierarchy.
TypesSwitch() - Constructor for class org.geppetto.model.types.util.TypesSwitch
Creates an instance of the switch.
typeToValueMapEClass - Variable in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
TypeToValueMapImpl - Class in org.geppetto.model.variables.impl
An implementation of the model object 'Type To Value Map'.
TypeToValueMapImpl() - Constructor for class org.geppetto.model.variables.impl.TypeToValueMapImpl
 

U

uncompressedMessageSize - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.BinaryMessageSender
 
unit - Variable in class org.geppetto.model.values.impl.PhysicalQuantityImpl
The cached value of the 'Unit' containment reference.
unit - Variable in class org.geppetto.model.values.impl.TimeSeriesImpl
The cached value of the 'Unit' containment reference.
unit - Variable in class org.geppetto.model.values.impl.UnitImpl
The cached value of the 'Unit' attribute.
Unit - Interface in org.geppetto.model.values
A representation of the model object 'Unit'.
UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Unit' class.
UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Unit' class.
UNIT__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
UNIT__UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Unit' attribute feature.
UNIT__UNIT - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Unit' attribute.
UNIT_EDEFAULT - Static variable in class org.geppetto.model.values.impl.UnitImpl
The default value of the 'Unit' attribute.
UNIT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Unit' class.
UNIT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Unit' class.
unitEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
UnitImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Unit'.
UnitImpl() - Constructor for class org.geppetto.model.values.impl.UnitImpl
 
unlink(String) - Method in class org.geppetto.core.services.DropboxUploadService
 
unlink(String) - Method in interface org.geppetto.core.services.IExternalUploadService
 
unLinkDropBox(String, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
unlinkDropBoxAccount(String) - Method in interface org.geppetto.core.manager.IDropBoxManager
Unlink the user dropbox account from the geppetto account
unlinkDropBoxAccount(String) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
update - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender.Preprocessor
 
updateEndDate() - Method in interface org.geppetto.core.data.model.IExperiment
 
updateEndDate() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
updateEndDate() - Method in class org.geppetto.persistence.db.model.Experiment
 
updateLastModified() - Method in interface org.geppetto.core.data.model.IExperiment
 
updateLastModified() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
updateLastModified() - Method in class org.geppetto.persistence.db.model.Experiment
 
updateStartDate() - Method in interface org.geppetto.core.data.model.IExperiment
 
updateStartDate() - Method in class org.geppetto.core.data.model.local.LocalExperiment
 
updateStartDate() - Method in class org.geppetto.persistence.db.model.Experiment
 
updateUser(IUser, String) - Method in class org.geppetto.core.data.DefaultGeppettoDataManager
 
updateUser(IUser, String) - Method in interface org.geppetto.core.data.IGeppettoDataManager
 
updateUser(IUser, String) - Method in class org.geppetto.persistence.GeppettoDataManager
 
upload(File) - Method in class org.geppetto.core.services.DropboxUploadService
 
upload(File) - Method in interface org.geppetto.core.services.IExternalUploadService
 
uploadModel(String, long, long, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
uploadModelToDropBox(String, IExperiment, IGeppettoProject, ModelFormat) - Method in interface org.geppetto.core.manager.IDropBoxManager
Upload the model associated with the given aspect of the active experiment to the dropbox folder
uploadModelToDropBox(String, IExperiment, IGeppettoProject, ModelFormat) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
uploadResults(String, long, long, String) - Method in class org.geppetto.frontend.controllers.ConnectionHandler
 
uploadResults(String, ResultsFormat, DropboxUploadService) - Method in class org.geppetto.simulation.manager.RuntimeExperiment
 
uploadResultsToDropBox(String, IExperiment, IGeppettoProject, ResultsFormat) - Method in interface org.geppetto.core.manager.IDropBoxManager
 
uploadResultsToDropBox(String, IExperiment, IGeppettoProject, ResultsFormat) - Method in class org.geppetto.simulation.manager.GeppettoManager
 
url - Variable in class org.geppetto.core.data.model.local.LocalPersistedData
 
url - Variable in class org.geppetto.frontend.tests.TestModel
 
url - Variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The cached value of the 'Url' attribute.
url - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
url - Variable in class org.geppetto.model.nwb.test.ReadNWBDataTest
 
url - Variable in class org.geppetto.model.types.impl.ImportTypeImpl
The cached value of the 'Url' attribute.
url - Variable in class org.geppetto.model.values.impl.URLImpl
The cached value of the 'Url' attribute.
URL - Interface in org.geppetto.model.values
A representation of the model object 'URL'.
URL - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'URL' class.
URL - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'URL' class.
url - Variable in class org.geppetto.persistence.db.model.PersistedData
 
URL__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
URL__URL - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Url' attribute feature.
URL__URL - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Url' attribute.
URL_EDEFAULT - Static variable in class org.geppetto.model.datasources.impl.DataSourceImpl
The default value of the 'Url' attribute.
URL_EDEFAULT - Static variable in class org.geppetto.model.types.impl.ImportTypeImpl
The default value of the 'Url' attribute.
URL_EDEFAULT - Static variable in class org.geppetto.model.values.impl.URLImpl
The default value of the 'Url' attribute.
URL_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'URL' class.
URL_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'URL' class.
URL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'URL Type' class.
URL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'URL Type' class.
URL_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
URL_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
URL_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
URL_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
URL_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
URL_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
URL_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
URL_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
URL_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
URL_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
URL_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
URL_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
URL_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
URL_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
URL_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'URL Type' class.
URL_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'URL Type' class.
urlEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
URLIdentifier - Variable in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
URLIdentifier - Variable in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
URLImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'URL'.
URLImpl() - Constructor for class org.geppetto.model.values.impl.URLImpl
 
URLReader - Class in org.geppetto.core.utilities
 
URLReader() - Constructor for class org.geppetto.core.utilities.URLReader
 
URLType - Interface in org.geppetto.model.types
A representation of the model object 'URL Type'.
urlTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
URLTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'URL Type'.
URLTypeImpl() - Constructor for class org.geppetto.model.types.impl.URLTypeImpl
 
user - Variable in class org.geppetto.persistence.db.DBManagerTest
 
User - Class in org.geppetto.persistence.db.model
 
User(String, String, String, List<GeppettoProject>, IUserGroup) - Constructor for class org.geppetto.persistence.db.model.User
 
user - Variable in class org.geppetto.persistence.util.DBTestData
 
user - Variable in class org.geppetto.simulation.manager.GeppettoManager
 
user2 - Variable in class org.geppetto.persistence.util.DBTestData
 
user3 - Variable in class org.geppetto.persistence.util.DBTestData
 
UserGeppettoProjectsResource - Class in org.geppetto.frontend.dashboard.service
 
UserGeppettoProjectsResource() - Constructor for class org.geppetto.frontend.dashboard.service.UserGeppettoProjectsResource
 
userGroup - Static variable in class org.geppetto.core.data.DefaultGeppettoDataManager
 
userGroup - Variable in class org.geppetto.persistence.db.model.User
 
UserGroup - Class in org.geppetto.persistence.db.model
 
UserGroup(String, List<UserPrivileges>, long, long) - Constructor for class org.geppetto.persistence.db.model.UserGroup
 
username - Variable in class org.geppetto.core.simulator.RemoteSimulatorConfig
 
userName - Variable in class org.geppetto.frontend.controllers.ConnectionHandler.UserPrivilegesDT
 
UserPrivileges - Enum in org.geppetto.core.data.model
 
UserPrivileges(String) - Constructor for enum org.geppetto.core.data.model.UserPrivileges
 
UserPrivilegesDT() - Constructor for class org.geppetto.frontend.controllers.ConnectionHandler.UserPrivilegesDT
 
UserResource - Class in org.geppetto.frontend.dashboard.service
 
UserResource() - Constructor for class org.geppetto.frontend.dashboard.service.UserResource
 
users - Variable in class org.geppetto.core.data.DefaultGeppettoDataManager
 
Utilities - Class in org.geppetto.simulator.external.services
Utility class for services.
Utilities() - Constructor for class org.geppetto.simulator.external.services.Utilities
 

V

value - Variable in class org.geppetto.core.data.model.local.LocalParameter
 
value - Variable in enum org.geppetto.model.datasources.BooleanOperator
 
value - Variable in enum org.geppetto.model.FileFormat
 
value - Variable in class org.geppetto.model.impl.StringToStringMapImpl
The cached value of the 'Value' attribute.
value - Variable in class org.geppetto.model.impl.VariableValueImpl
The cached value of the 'Value' containment reference.
value - Variable in enum org.geppetto.model.values.Connectivity
 
value - Variable in enum org.geppetto.model.values.ImageFormat
 
value - Variable in class org.geppetto.model.values.impl.CompositeImpl
The cached value of the 'Value' map.
value - Variable in class org.geppetto.model.values.impl.MDTimeSeriesImpl
The cached value of the 'Value' containment reference list.
value - Variable in class org.geppetto.model.values.impl.QuantityImpl
The cached value of the 'Value' attribute.
value - Variable in class org.geppetto.model.values.impl.StringToValueMapImpl
The cached value of the 'Value' containment reference.
value - Variable in class org.geppetto.model.values.impl.TimeSeriesImpl
The cached value of the 'Value' attribute list.
Value - Interface in org.geppetto.model.values
A representation of the model object 'Value'.
VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Value' class.
VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Value' class.
value - Variable in class org.geppetto.model.variables.impl.TypeToValueMapImpl
The cached value of the 'Value' containment reference.
value - Variable in class org.geppetto.persistence.db.model.Parameter
 
VALUE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
VALUE_EDEFAULT - Static variable in class org.geppetto.model.impl.StringToStringMapImpl
The default value of the 'Value' attribute.
VALUE_EDEFAULT - Static variable in class org.geppetto.model.values.impl.QuantityImpl
The default value of the 'Value' attribute.
VALUE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Value' class.
VALUE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Value' class.
valueEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
ValueImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Value'.
ValueImpl() - Constructor for class org.geppetto.model.values.impl.ValueImpl
 
valueOf(String) - Static method in enum org.geppetto.core.common.GeppettoErrorCodes
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.core.data.model.ExperimentStatus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.core.data.model.PersistedDataType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.core.data.model.ResultsFormat
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.core.data.model.UserPrivileges
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.core.manager.Scope
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.core.services.GeppettoFeature
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.frontend.controllers.SimulationServerConfig.ServerBehaviorModes
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.frontend.messages.InboundMessages
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.frontend.messages.OutboundMessages
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.frontend.messaging.MessageSenderEvent.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.frontend.Resources
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.frontend.tests.TestFeatures
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.datasources.BooleanOperator
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.FileFormat
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.neuroml.utils.ModelFormatMapping
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.neuroml.utils.Resources
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.values.Connectivity
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.model.values.ImageFormat
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.simulation.manager.ViewProcessor.ConflictStrategy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.geppetto.simulation.SimulatorRuntimeStatus
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.geppetto.core.common.GeppettoErrorCodes
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.core.data.model.ExperimentStatus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.core.data.model.PersistedDataType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.core.data.model.ResultsFormat
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.core.data.model.UserPrivileges
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.core.manager.Scope
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.core.services.GeppettoFeature
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.frontend.controllers.SimulationServerConfig.ServerBehaviorModes
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.frontend.messages.InboundMessages
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.frontend.messages.OutboundMessages
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.frontend.messaging.MessageSenderEvent.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.frontend.Resources
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.frontend.tests.TestFeatures
Returns an array containing the constants of this enum type, in the order they are declared.
VALUES - Static variable in enum org.geppetto.model.datasources.BooleanOperator
A public read-only list of all the 'Boolean Operator' enumerators.
values() - Static method in enum org.geppetto.model.datasources.BooleanOperator
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class org.geppetto.model.datasources.impl.QueryResultImpl
The cached value of the 'Values' attribute list.
values - Variable in class org.geppetto.model.datasources.impl.SerializableQueryResultImpl
The cached value of the 'Values' attribute list.
VALUES - Static variable in enum org.geppetto.model.FileFormat
A public read-only list of all the 'File Format' enumerators.
values() - Static method in enum org.geppetto.model.FileFormat
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.model.neuroml.utils.ModelFormatMapping
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.model.neuroml.utils.Resources
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
Returns an array containing the constants of this enum type, in the order they are declared.
VALUES - Static variable in enum org.geppetto.model.values.Connectivity
A public read-only list of all the 'Connectivity' enumerators.
values() - Static method in enum org.geppetto.model.values.Connectivity
Returns an array containing the constants of this enum type, in the order they are declared.
VALUES - Static variable in enum org.geppetto.model.values.ImageFormat
A public read-only list of all the 'Image Format' enumerators.
values() - Static method in enum org.geppetto.model.values.ImageFormat
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.simulation.manager.ViewProcessor.ConflictStrategy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.geppetto.simulation.SimulatorRuntimeStatus
Returns an array containing the constants of this enum type, in the order they are declared.
VALUES_ARRAY - Static variable in enum org.geppetto.model.datasources.BooleanOperator
An array of all the 'Boolean Operator' enumerators.
VALUES_ARRAY - Static variable in enum org.geppetto.model.FileFormat
An array of all the 'File Format' enumerators.
VALUES_ARRAY - Static variable in enum org.geppetto.model.values.Connectivity
An array of all the 'Connectivity' enumerators.
VALUES_ARRAY - Static variable in enum org.geppetto.model.values.ImageFormat
An array of all the 'Image Format' enumerators.
ValuesAdapterFactory - Class in org.geppetto.model.values.util
The Adapter Factory for the model.
ValuesAdapterFactory() - Constructor for class org.geppetto.model.values.util.ValuesAdapterFactory
Creates an instance of the adapter factory.
valuesFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
valuesFactory - Static variable in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
valuesFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
valuesFactory - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
valuesFactory - Static variable in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
valuesFactory - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
valuesFactory - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
ValuesFactory - Interface in org.geppetto.model.values
The Factory for the model.
ValuesFactoryImpl - Class in org.geppetto.model.values.impl
An implementation of the model Factory.
ValuesFactoryImpl() - Constructor for class org.geppetto.model.values.impl.ValuesFactoryImpl
Creates an instance of the factory.
ValuesPackage - Interface in org.geppetto.model.values
The Package for the model.
ValuesPackage.Literals - Interface in org.geppetto.model.values
Defines literals for the meta objects that represent each class, each feature of each class, each operation of each class, each enum, and each data type
ValuesPackageImpl - Class in org.geppetto.model.values.impl
An implementation of the model Package.
ValuesPackageImpl() - Constructor for class org.geppetto.model.values.impl.ValuesPackageImpl
Creates an instance of the model Package, registered with EPackage.Registry by the package package URI value.
ValuesSwitch<T> - Class in org.geppetto.model.values.util
The Switch for the model's inheritance hierarchy.
ValuesSwitch() - Constructor for class org.geppetto.model.values.util.ValuesSwitch
Creates an instance of the switch.
ValuesUtility - Class in org.geppetto.model.values.util
 
ValuesUtility() - Constructor for class org.geppetto.model.values.util.ValuesUtility
 
variable - Variable in class org.geppetto.core.data.model.local.LocalParameter
 
variable - Variable in class org.geppetto.model.values.impl.PointerElementImpl
The cached value of the 'Variable' reference.
Variable - Interface in org.geppetto.model.variables
A representation of the model object 'Variable'.
VARIABLE - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Variable' class.
VARIABLE - Static variable in interface org.geppetto.model.variables.VariablesPackage
The meta object id for the 'Variable' class.
variable - Variable in class org.geppetto.persistence.db.model.Parameter
 
VARIABLE___GET_PATH - Static variable in interface org.geppetto.model.variables.VariablesPackage
The operation id for the 'Get Path' operation.
VARIABLE__ANONYMOUS_TYPES - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Anonymous Types' containment reference list feature.
VARIABLE__ANONYMOUS_TYPES - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Anonymous Types' containment reference list.
VARIABLE__ID - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Id' attribute.
VARIABLE__INITIAL_VALUES - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Initial Values' map feature.
VARIABLE__INITIAL_VALUES - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Initial Values' map.
VARIABLE__NAME - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Name' attribute.
VARIABLE__POSITION - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Position' containment reference feature.
VARIABLE__POSITION - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Position' containment reference.
VARIABLE__STATIC - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Static' attribute feature.
VARIABLE__STATIC - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Static' attribute.
VARIABLE__SYNCHED - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Synched' attribute.
VARIABLE__TAGS - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Tags' reference list.
VARIABLE__TYPES - Static variable in interface org.geppetto.model.variables.VariablesPackage.Literals
The meta object literal for the 'Types' reference list feature.
VARIABLE__TYPES - Static variable in interface org.geppetto.model.variables.VariablesPackage
The feature id for the 'Types' reference list.
VARIABLE_FEATURE_COUNT - Static variable in interface org.geppetto.model.variables.VariablesPackage
The number of structural features of the 'Variable' class.
VARIABLE_OPERATION_COUNT - Static variable in interface org.geppetto.model.variables.VariablesPackage
The number of operations of the 'Variable' class.
VARIABLE_VALUE - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Variable Value' class.
VARIABLE_VALUE - Static variable in interface org.geppetto.model.GeppettoPackage
The meta object id for the 'Variable Value' class.
VARIABLE_VALUE__POINTER - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Pointer' containment reference feature.
VARIABLE_VALUE__POINTER - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Pointer' containment reference.
VARIABLE_VALUE__VALUE - Static variable in interface org.geppetto.model.GeppettoPackage.Literals
The meta object literal for the 'Value' containment reference feature.
VARIABLE_VALUE__VALUE - Static variable in interface org.geppetto.model.GeppettoPackage
The feature id for the 'Value' containment reference.
VARIABLE_VALUE_FEATURE_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of structural features of the 'Variable Value' class.
VARIABLE_VALUE_OPERATION_COUNT - Static variable in interface org.geppetto.model.GeppettoPackage
The number of operations of the 'Variable Value' class.
variableEClass - Variable in class org.geppetto.model.variables.impl.VariablesPackageImpl
 
variableId - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.GeppettoModelAPIParameters
 
VariableImpl - Class in org.geppetto.model.variables.impl
An implementation of the model object 'Variable'.
VariableImpl() - Constructor for class org.geppetto.model.variables.impl.VariableImpl
 
variables - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
variables - Variable in class org.geppetto.model.impl.GeppettoModelImpl
The cached value of the 'Variables' containment reference list.
variables - Variable in class org.geppetto.model.types.impl.CompositeTypeImpl
The cached value of the 'Variables' containment reference list.
variables - Variable in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
The cached value of the 'Variables' containment reference list.
variables - Variable in class org.geppetto.model.types.impl.ConnectionTypeImpl
The cached value of the 'Variables' containment reference list.
VariablesAdapterFactory - Class in org.geppetto.model.variables.util
The Adapter Factory for the model.
VariablesAdapterFactory() - Constructor for class org.geppetto.model.variables.util.VariablesAdapterFactory
Creates an instance of the adapter factory.
variablesFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.APopulateProjectionTypes
 
variablesFactory - Static variable in class org.geppetto.model.neuroml.modelInterpreterUtils.NeuroMLModelInterpreterUtils
 
variablesFactory - Variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
variablesFactory - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
variablesFactory - Static variable in class org.geppetto.model.neuroml.utils.ModelInterpreterUtils
 
variablesFactory - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
variablesFactory - Variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
VariablesFactory - Interface in org.geppetto.model.variables
The Factory for the model.
VariablesFactoryImpl - Class in org.geppetto.model.variables.impl
An implementation of the model Factory.
VariablesFactoryImpl() - Constructor for class org.geppetto.model.variables.impl.VariablesFactoryImpl
Creates an instance of the factory.
VariablesPackage - Interface in org.geppetto.model.variables
The Package for the model.
VariablesPackage.Literals - Interface in org.geppetto.model.variables
Defines literals for the meta objects that represent each class, each feature of each class, each operation of each class, each enum, and each data type
VariablesPackageImpl - Class in org.geppetto.model.variables.impl
An implementation of the model Package.
VariablesPackageImpl() - Constructor for class org.geppetto.model.variables.impl.VariablesPackageImpl
Creates an instance of the model Package, registered with EPackage.Registry by the package package URI value.
VariablesSwitch<T> - Class in org.geppetto.model.variables.util
The Switch for the model's inheritance hierarchy.
VariablesSwitch() - Constructor for class org.geppetto.model.variables.util.VariablesSwitch
Creates an instance of the switch.
VariableValue - Interface in org.geppetto.model
A representation of the model object 'Variable Value'.
variableValueEClass - Variable in class org.geppetto.model.impl.GeppettoPackageImpl
 
VariableValueImpl - Class in org.geppetto.model.impl
An implementation of the model object 'Variable Value'.
VariableValueImpl() - Constructor for class org.geppetto.model.impl.VariableValueImpl
 
VelocityUtils - Class in org.geppetto.core.datasources
 
VelocityUtils() - Constructor for class org.geppetto.core.datasources.VelocityUtils
 
VelocityUtilsTest - Class in org.geppetto.core
 
VelocityUtilsTest() - Constructor for class org.geppetto.core.VelocityUtilsTest
 
verbose - Variable in class org.geppetto.model.neuroml.summaryUtils.PopulateSummaryNodesUtils
 
view - Variable in class org.geppetto.core.data.model.local.LocalExperiment
 
view - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
view - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
view - Variable in class org.geppetto.persistence.db.model.Experiment
 
view - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 
View - Class in org.geppetto.persistence.db.model
 
View() - Constructor for class org.geppetto.persistence.db.model.View
 
View(String) - Constructor for class org.geppetto.persistence.db.model.View
 
viewCustomisations - Variable in class org.geppetto.simulation.visitor.ImportTypesVisitor
 
ViewProcessor - Class in org.geppetto.simulation.manager
 
ViewProcessor() - Constructor for class org.geppetto.simulation.manager.ViewProcessor
 
ViewProcessor.ConflictStrategy - Enum in org.geppetto.simulation.manager
 
ViewProcessor.JsonObjectExtensionConflictException - Exception in org.geppetto.simulation.manager
 
ViewProcessorTest - Class in org.geppetto.simulation.test
 
ViewProcessorTest() - Constructor for class org.geppetto.simulation.test.ViewProcessorTest
 
ViewSerializer - Class in org.geppetto.persistence.util
Creates serializer and deserializer for View object and GeppettoProject
ViewSerializer() - Constructor for class org.geppetto.persistence.util.ViewSerializer
 
viewStates - Variable in class org.geppetto.core.data.model.local.LocalView
 
viewStates - Variable in class org.geppetto.persistence.db.model.View
 
visitFile(Path, BasicFileAttributes) - Method in class org.geppetto.core.data.FindLocalProjectsVisitor
 
VISUAL_GROUP - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Visual Group' class.
VISUAL_GROUP - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Visual Group' class.
VISUAL_GROUP___GET_PATH - Static variable in interface org.geppetto.model.values.ValuesPackage
The operation id for the 'Get Path' operation.
VISUAL_GROUP__HIGH_SPECTRUM_COLOR - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'High Spectrum Color' attribute feature.
VISUAL_GROUP__HIGH_SPECTRUM_COLOR - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'High Spectrum Color' attribute.
VISUAL_GROUP__ID - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Id' attribute.
VISUAL_GROUP__LOW_SPECTRUM_COLOR - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Low Spectrum Color' attribute feature.
VISUAL_GROUP__LOW_SPECTRUM_COLOR - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Low Spectrum Color' attribute.
VISUAL_GROUP__NAME - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Name' attribute.
VISUAL_GROUP__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
VISUAL_GROUP__TAGS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Tags' reference list.
VISUAL_GROUP__TYPE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Type' attribute feature.
VISUAL_GROUP__TYPE - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Type' attribute.
VISUAL_GROUP__VISUAL_GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Visual Group Elements' containment reference list feature.
VISUAL_GROUP__VISUAL_GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Visual Group Elements' containment reference list.
VISUAL_GROUP_ELEMENT - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Visual Group Element' class.
VISUAL_GROUP_ELEMENT - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Visual Group Element' class.
VISUAL_GROUP_ELEMENT___GET_PATH - Static variable in interface org.geppetto.model.values.ValuesPackage
The operation id for the 'Get Path' operation.
VISUAL_GROUP_ELEMENT__DEFAULT_COLOR - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Default Color' attribute feature.
VISUAL_GROUP_ELEMENT__DEFAULT_COLOR - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Default Color' attribute.
VISUAL_GROUP_ELEMENT__ID - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Id' attribute.
VISUAL_GROUP_ELEMENT__NAME - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Name' attribute.
VISUAL_GROUP_ELEMENT__PARAMETER - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Parameter' containment reference feature.
VISUAL_GROUP_ELEMENT__PARAMETER - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Parameter' containment reference.
VISUAL_GROUP_ELEMENT__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
VISUAL_GROUP_ELEMENT__TAGS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Tags' reference list.
VISUAL_GROUP_ELEMENT_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Visual Group Element' class.
VISUAL_GROUP_ELEMENT_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Visual Group Element' class.
VISUAL_GROUP_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Visual Group' class.
VISUAL_GROUP_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Visual Group' class.
VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Visual Type' class.
VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The meta object id for the 'Visual Type' class.
VISUAL_TYPE___EXTENDS_TYPE__TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Extends Type' operation.
VISUAL_TYPE___GET_DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Default Value' operation.
VISUAL_TYPE___GET_PATH - Static variable in interface org.geppetto.model.types.TypesPackage
The operation id for the 'Get Path' operation.
VISUAL_TYPE__ABSTRACT - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Abstract' attribute.
VISUAL_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage.Literals
The meta object literal for the 'Default Value' containment reference feature.
VISUAL_TYPE__DEFAULT_VALUE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Default Value' containment reference.
VISUAL_TYPE__DOMAIN_MODEL - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Domain Model' reference.
VISUAL_TYPE__ID - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Id' attribute.
VISUAL_TYPE__NAME - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Name' attribute.
VISUAL_TYPE__REFERENCED_VARIABLES - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Referenced Variables' reference list.
VISUAL_TYPE__SUPER_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Super Type' reference list.
VISUAL_TYPE__SYNCHED - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Synched' attribute.
VISUAL_TYPE__TAGS - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Tags' reference list.
VISUAL_TYPE__VISUAL_TYPE - Static variable in interface org.geppetto.model.types.TypesPackage
The feature id for the 'Visual Type' reference.
VISUAL_TYPE_FEATURE_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of structural features of the 'Visual Type' class.
VISUAL_TYPE_OPERATION_COUNT - Static variable in interface org.geppetto.model.types.TypesPackage
The number of operations of the 'Visual Type' class.
VISUAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Visual Value' class.
VISUAL_VALUE - Static variable in interface org.geppetto.model.values.ValuesPackage
The meta object id for the 'Visual Value' class.
VISUAL_VALUE__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Group Elements' reference list feature.
VISUAL_VALUE__GROUP_ELEMENTS - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Group Elements' reference list.
VISUAL_VALUE__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage.Literals
The meta object literal for the 'Position' containment reference feature.
VISUAL_VALUE__POSITION - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Position' containment reference.
VISUAL_VALUE__SYNCHED - Static variable in interface org.geppetto.model.values.ValuesPackage
The feature id for the 'Synched' attribute.
VISUAL_VALUE_FEATURE_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of structural features of the 'Visual Value' class.
VISUAL_VALUE_OPERATION_COUNT - Static variable in interface org.geppetto.model.values.ValuesPackage
The number of operations of the 'Visual Value' class.
VisualGroup - Interface in org.geppetto.model.values
A representation of the model object 'Visual Group'.
visualGroupEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
VisualGroupElement - Interface in org.geppetto.model.values
A representation of the model object 'Visual Group Element'.
visualGroupElementEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
VisualGroupElementImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Visual Group Element'.
VisualGroupElementImpl() - Constructor for class org.geppetto.model.values.impl.VisualGroupElementImpl
 
visualGroupElements - Variable in class org.geppetto.model.values.impl.VisualGroupImpl
The cached value of the 'Visual Group Elements' containment reference list.
VisualGroupImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Visual Group'.
VisualGroupImpl() - Constructor for class org.geppetto.model.values.impl.VisualGroupImpl
 
visualGroups - Variable in class org.geppetto.model.types.impl.CompositeVisualTypeImpl
The cached value of the 'Visual Groups' containment reference list.
visualObjectsSegments - Variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
VisualPointer - Interface in org.geppetto.model.values
A representation of the model object 'Visual Pointer'.
VisualReference - Interface in org.geppetto.model.values
A representation of the model object 'Visual Reference'.
visualType - Variable in class org.geppetto.model.types.impl.TypeImpl
The cached value of the 'Visual Type' reference.
VisualType - Interface in org.geppetto.model.types
A representation of the model object 'Visual Type'.
visualTypeEClass - Variable in class org.geppetto.model.types.impl.TypesPackageImpl
 
VisualTypeImpl - Class in org.geppetto.model.types.impl
An implementation of the model object 'Visual Type'.
VisualTypeImpl() - Constructor for class org.geppetto.model.types.impl.VisualTypeImpl
 
VisualValue - Interface in org.geppetto.model.values
A representation of the model object 'Visual Value'.
visualValueEClass - Variable in class org.geppetto.model.values.impl.ValuesPackageImpl
 
VisualValueImpl - Class in org.geppetto.model.values.impl
An implementation of the model object 'Visual Value'.
VisualValueImpl() - Constructor for class org.geppetto.model.values.impl.VisualValueImpl
 
volatileProject - Variable in class org.geppetto.core.data.model.local.LocalGeppettoProject
 
volatileProject - Variable in class org.geppetto.persistence.db.model.GeppettoProject
 

W

watch - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.ReceivedObject
 
watchedVariables - Variable in class org.geppetto.core.data.model.local.LocalAspectConfiguration
 
watchedVariables - Variable in class org.geppetto.frontend.controllers.WebsocketConnection.NewExperiment
 
watchedVariables - Variable in class org.geppetto.persistence.db.model.AspectConfiguration
 
webAuth - Variable in class org.geppetto.core.services.DropboxUploadService
 
websocketConnection - Variable in class org.geppetto.frontend.controllers.ConnectionHandler
 
WebsocketConnection - Class in org.geppetto.frontend.controllers
Class used to process Web Socket Connections.
WebsocketConnection() - Constructor for class org.geppetto.frontend.controllers.WebsocketConnection
 
WebsocketConnection.BatchExperiment - Class in org.geppetto.frontend.controllers
 
WebsocketConnection.GeppettoModelAPIParameters - Class in org.geppetto.frontend.controllers
 
WebsocketConnection.GetScript - Class in org.geppetto.frontend.controllers
 
WebsocketConnection.NewExperiment - Class in org.geppetto.frontend.controllers
 
WebsocketConnection.ReceivedObject - Class in org.geppetto.frontend.controllers
 
WebsocketConnection.RunnableQueryDT - Class in org.geppetto.frontend.controllers
 
widgetType - Variable in class org.geppetto.model.neuroml.features.CanvasCustomisation
 
writeIGeppettoProjectToJson(IGeppettoProject, File, Zipper, String) - Method in class org.geppetto.simulation.utilities.GeppettoProjectZipper
Clones a Geppetto Project Object and writes it in JSON format to a temporary file
writeInternal(Object, HttpOutputMessage) - Method in class org.geppetto.frontend.controllers.MappingJackson2HttpMessageConverter
 
wsOutbound - Variable in class org.geppetto.frontend.messaging.DefaultMessageSender
 

X

x - Variable in class org.geppetto.model.swc.format.SWCPoint
 
x - Variable in class org.geppetto.model.values.impl.PointImpl
The cached value of the 'X' attribute.
X_EDEFAULT - Static variable in class org.geppetto.model.values.impl.PointImpl
The default value of the 'X' attribute.
XAXIS_LABEL_EDEFAULT - Static variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The default value of the 'XAxis Label' attribute.
xAxisLabel - Variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The cached value of the 'XAxis Label' attribute.

Y

y - Variable in class org.geppetto.model.swc.format.SWCPoint
 
y - Variable in class org.geppetto.model.values.impl.PointImpl
The cached value of the 'Y' attribute.
Y_EDEFAULT - Static variable in class org.geppetto.model.values.impl.PointImpl
The default value of the 'Y' attribute.
YAXIS_LABEL_EDEFAULT - Static variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The default value of the 'YAxis Label' attribute.
yAxisLabel - Variable in class org.geppetto.model.values.impl.FunctionPlotImpl
The cached value of the 'YAxis Label' attribute.

Z

z - Variable in class org.geppetto.model.swc.format.SWCPoint
 
z - Variable in class org.geppetto.model.values.impl.PointImpl
The cached value of the 'Z' attribute.
Z_EDEFAULT - Static variable in class org.geppetto.model.values.impl.PointImpl
The default value of the 'Z' attribute.
ZIP_VALUE - Static variable in enum org.geppetto.model.FileFormat
The 'ZIP' literal value.
Zipper - Class in org.geppetto.core.utilities
 
Zipper(String) - Constructor for class org.geppetto.core.utilities.Zipper
 
Zipper(String, String) - Constructor for class org.geppetto.core.utilities.Zipper
 
zipper - Variable in class org.geppetto.simulation.visitor.GeppettoModelTypesVisitor
 
zipper - Variable in class org.geppetto.simulation.visitor.GeppettoModelVisitor
 
zos - Variable in class org.geppetto.core.utilities.Zipper
 

_

_bc - Variable in class org.geppetto.core.data.DataManagerServiceCreator
 
_callback - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
_commands - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
_connections - Variable in class org.geppetto.frontend.controllers.ConnectionsManager
 
_dataBytes - Variable in class org.geppetto.core.recordings.RecordingObject
 
_dataType - Variable in class org.geppetto.core.recordings.RecordingObject
 
_directoryToExecuteFrom - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
_file - Variable in class org.geppetto.core.model.Recording
 
_fileName - Variable in class org.geppetto.core.recordings.GeppettoRecordingCreator
 
_fileToExecute - Variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
_id - Variable in enum org.geppetto.model.neuroml.utils.Resources
 
_id - Variable in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
_inclusions - Variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
_LEMSString - Variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
_logger - Static variable in class org.geppetto.core.externalprocesses.ExternalProcess
 
_logger - Static variable in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
_logger - Static variable in class org.geppetto.core.recordings.GeppettoRecordingCreator
 
_logger - Static variable in class org.geppetto.core.s3.S3Manager
 
_logger - Static variable in class org.geppetto.core.services.registry.ApplicationListenerBean
 
_logger - Static variable in class org.geppetto.core.TestConvertACNet2DATToRecordingClass
 
_logger - Static variable in class org.geppetto.core.TestConvertBigDATToRecordingClass
 
_logger - Static variable in class org.geppetto.core.TestConvertDATToRecordingClass
 
_logger - Static variable in class org.geppetto.core.TestConvertMuscleDATToRecordingClass
 
_logger - Static variable in class org.geppetto.core.TestGeppettoRecordingsCreator
 
_logger - Static variable in class org.geppetto.core.TestHDFBindings
 
_logger - Static variable in class org.geppetto.core.utilities.URLReader
 
_logger - Static variable in class org.geppetto.frontend.controllers.ConnectionsManager
 
_logger - Static variable in class org.geppetto.model.neuroml.modelInterpreterUtils.PopulateTypes
 
_logger - Static variable in class org.geppetto.model.neuroml.services.LEMSConversionService
 
_logger - Static variable in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
_logger - Static variable in class org.geppetto.model.neuroml.services.NeuroMLModelInterpreterService
 
_logger - Static variable in class org.geppetto.model.neuroml.test.LEMSConversionServiceTest
 
_logger - Static variable in class org.geppetto.model.neuroml.test.NeuroMLModelInterpreterServiceTest
 
_logger - Static variable in class org.geppetto.model.neuroml.test.OptimizedLEMSReaderTest
 
_logger - Static variable in class org.geppetto.model.neuroml.test.PopulateSummaryNodesUtilsTest
 
_logger - Static variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
_logger - Static variable in class org.geppetto.model.neuroml.visualUtils.ExtractVisualType
 
_logger - Static variable in class org.geppetto.model.neuroml.visualUtils.PopulateChannelDensityVisualGroups
 
_logger - Static variable in class org.geppetto.persistence.db.DBManager
 
_logger - Static variable in class org.geppetto.persistence.db.OSGiLocalPersistenceManagerFactoryBean
 
_maxBufferSize - Variable in class org.geppetto.simulation.AppConfig
 
_metaType - Variable in class org.geppetto.core.recordings.RecordingObject
 
_neuromlId - Variable in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
 
_neuroMLModelInterpreter - Variable in class org.geppetto.model.neuroml.services.LEMSModelInterpreterService
 
_neuroMLString - Variable in class org.geppetto.model.neuroml.utils.OptimizedLEMSReader
 
_processedSteps - Variable in class org.geppetto.simulation.manager.SimulatorRuntime
 
_processStream - Variable in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
_s3Connection - Variable in class org.geppetto.core.s3.S3Manager
 
_simulationCapacity - Variable in class org.geppetto.simulation.AppConfig
 
_status - Variable in class org.geppetto.simulation.manager.SimulatorRuntime
 
_stepsConsumed - Variable in class org.geppetto.simulation.manager.SimulatorRuntime
 
_summaryId - Variable in enum org.geppetto.model.neuroml.summaryUtils.ResourcesSummary
 
_type - Variable in class org.geppetto.core.data.DataManagerServiceCreator
 
_type - Variable in class org.geppetto.core.externalprocesses.ExternalProcessWatcher
 
_unit - Variable in class org.geppetto.core.recordings.RecordingObject
 
_updateCycle - Variable in class org.geppetto.simulation.AppConfig
 
_value - Variable in enum org.geppetto.model.neuroml.utils.ModelFormatMapping
 
_value - Variable in enum org.geppetto.model.neuroml.utils.Resources
 
_value - Variable in enum org.geppetto.model.neuroml.utils.ResourcesDomainType
 
_values - Variable in class org.geppetto.core.recordings.RecordingObject
 
_variable - Variable in class org.geppetto.core.recordings.RecordingObject
 
_XValuesLength - Variable in class org.geppetto.core.recordings.RecordingObject
 
_YValuesLength - Variable in class org.geppetto.core.recordings.RecordingObject
 
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